Mauremys reevesii (Reeves's turtle): 120371965
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Entry
120371965 CDS
T07797
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv04510
Focal adhesion
mrv04512
ECM-receptor interaction
mrv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120371965 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120371965 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120371965 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mrv04147
]
120371965 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
mrv00536
]
120371965 (COL4A6)
Exosome [BR:
mrv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120371965 (COL4A6)
Glycosaminoglycan binding proteins [BR:
mrv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120371965 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120371965
NCBI-ProteinID:
XP_039344434
LinkDB
All DBs
Position
LG9:86589340..86778166
Genome browser
AA seq
1686 aa
AA seq
DB search
MHTGLVVLVAFCLAAELVLGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGPIGNQGPI
GAPGFTGQEGLAGAKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFP
GLDGCNGSIGSPGVSGLDGFPGTPGLPGRFGPKGPKGEPVYAEGGLKGSKGDSGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLEGPPGSVGPQGPKGNMGVGFRGETGEKGDVGPTGPAGP
PPSTGILEFMGFPKGKPGVKGEPGPKGFPGSKGLPGPLGIGGIGEKGEKGIPGLPGGRGF
LGLDGSDGIPGRKGQFGFPGFPGLDGVQGMKGELGEMGPPGPLIFLDGEDGLVSGVPGDP
GTPGTPGPRGDEGMAGPPGLPGIPGLSALVRGPPGPMGFPGIPGTTGEPGDPGRATIGLP
GTPGINGLPGMPGPPGLPGPLPEEILSGEPGEPGRPGQRGTPGIFGLKGTKGDPGDCACD
GGATRAGLKGAPGPLGPPGSPGEPGFKGSSGDPGTVGAQGPRGPPALPGQPGSPGLKGEK
GNPSFARGRGLRGDPGAIGVRGPSGIPGTPGRDGFPGLPGRPGPPGDGGLGFPGEKGLPG
LPGFKGRRGESGLPGIGFPGPSGVRGPAGDPGMDGFLGQPGLPGPAGITLPCEVPGAFGA
PGPPGMPGFPGLKGSPGFPGIPGQPGLSGSKGQPGIPGSVGLPGAPGFPGPRGEPGPQGL
PGLDGADGFPGKMGAPGLSGAKGAPGEVFGAERGALGEPGRPGFIGDKGLTGQPGFPGQE
GVDGRPGSPGFKGQQGNPGLPGILGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLPGVK
GPTGDAGPPGPAGMKGFPGLEGFPGPPGDRGFPGSPGPLGRDGRPGFSGAKGEKGPPGLI
GFPGMPGLPGIPGVSGLKGLPGSAGREGNIGYSGPTGLKGDRGDRGPPGLPVLRPPELAL
VLKGDKGDPGSAGLRGFPGPRGERGFPGTHGQPGLPGSRGLPATDRGLPGDAGFPGLPGS
PGLPGQKGLAGIIGLPGFPGESGSEGISGAPGFPGTGGFPGPKGDPGESLGISGGLGNKG
ERGDRGFPGERGKDGPMGEPGYPGTAGMDGPKGIPGDLGREGPPGLPGIAGLRGNAGLPG
SPGQPGPLGFIGLPGRAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGLPGP
KGEEGSPGFGLGAPGLPGQKGSSGDTGPPGTLGLPGLPGPPGISLPSNIPGRRGDPGRPG
VDGNPGPPGPPGPRGLSGPASNQGDTGLPGRPGVPGLPGIKGDMGLPGPPGIPGASGLKG
VKAEPGFMGMPGKDGLPGDPGIPGLKGETGSRGFSGSPGAPGLVPKPEEVIVPPGLPGLP
GIDGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGPDGAVGDPGTPGIPGPPGLE
GVSGKPGPFGLPGMPGRGVGVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAH
NQDLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPQYI
SRCSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCL
EDFRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVSAPPSETLKAGQLRTRVSRCQ
VCMKNL
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgttctcgttgctttctgcctagctgcggaactggtgcttggg
ggtgggaagaaatcctataacggaccatgcgggggtcgagattgcagcgcgggctgcaaa
tgttttccagaaaaaggtgctcggggtcgaccaggacctattggtaaccaaggacctata
ggtgctccaggatttactgggcaagaaggtttggcaggggcaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagttcctgga
tttcaaggcatcaatgggattccgggacaccctggccagccagggcccagaggttttcct
ggccttgatggctgcaatggttctattgggagtcctggcgtttcagggttggatggattt
cctggtacaccggggctgcctggtcgctttggtcccaaaggtcccaaaggagaacctgtg
tatgccgaaggtggccttaaaggaagtaagggtgacagtggtcttcctggactggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttggaggggccaccgggttcagtgggaccacaaggaccaaaaggtaacatgggagta
ggtttccgaggagagacaggtgaaaagggagatgtcggaccaactggccctgcaggtccc
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagtaaag
ggtgagccaggccctaaaggattccctgggagtaaaggattacctggccctctgggcatt
gggggtatcggagaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggattccagggagaaagggtcagtttggcttcccaggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttttcttgatggagaagacggactggtctcaggtgtgccaggagatccc
gggactccagggactccaggccctcgaggagatgaagggatggccggtccaccaggcctt
cctggcattccaggtctctcagctcttgttcgagggccaccaggtcccatgggatttcca
ggtattccaggtactactggtgaaccaggagacccagggagagcaacaattggattacca
ggcactccaggaataaatggtttaccgggcatgccaggacctccaggactgcctggtcca
ttacctgaagaaatcctcagtggagaacctggggaaccaggaagacctggacaacggggg
acaccaggaatttttggactaaagggaaccaaaggggatccaggtgattgtgcttgtgat
ggaggagccactagagctggactaaaaggtgcaccaggccctctgggtccaccaggaagt
cctggtgaacctgggtttaagggttccagtggagatccaggcactgtgggtgcacaaggg
ccacgagggcctccagctttacctggtcaaccaggttctccaggccttaagggagaaaaa
gggaatccatcttttgcaagaggcagaggtctccggggggatcctggtgcaataggagtg
agagggccttctggtatcccaggaactcctggcagagatggattcccaggtttaccaggc
cggccaggtcctccgggtgatggtggactaggatttccaggcgaaaaaggcctgccagga
ttacctggcttcaagggccggcgtggggagagtggtcttcctggcattggtttcccaggt
cctagcggagttcgcggccctgcaggtgacccaggaatggatggctttctaggacaacca
ggtcttccaggacctgcagggatcaccttgccctgtgaagttcccggagcatttggtgca
cctgggcctccaggcatgccaggatttccaggtctcaagggcagcccggggtttccaggc
attccaggtcaacctggattaagtgggtcaaaaggacaaccaggtattccaggatcagtg
ggattgccaggagcaccgggctttcctggacctcgtggagaaccgggaccacaagggctt
ccaggacttgatggagcagatggtttccctggaaagatgggagctcctggcttgtcaggg
gcaaaaggagctcctggagaagtgtttggtgctgaaagaggagccctgggcgagcctggc
agacctggattcataggagataaagggcttactggacaacctggatttcctggacaggag
ggtgttgacggaaggcctggctcaccaggttttaaaggtcaacagggtaatccagggctc
ccaggtattcttggattgcgaggacctcctggtcctggaggtccgtttggcattaaaggc
gaaccaggtcccaggggagcagttggcttctcaggatcaccaggacttcctggagtcaaa
ggaccaacgggcgatgcaggtccaccgggacctgctggtatgaaaggcttcccaggccta
gaaggttttccaggaccacctggggacagaggattcccagggtcacctgggcctttgggt
agagatggacgtccaggtttctctggagcaaaaggtgaaaagggtcctcctgggttgatt
ggctttcctggcatgccaggcctgcctggtatccctggggtgagtgggctgaaaggactt
cctgggtcagctggaagagaaggaaatattggatattctggacccactggtctaaaaggt
gacaggggagatcgaggtccccccggactcccggttcttaggcctccagaattggcattg
gtattgaagggagacaaaggtgatcctggatcagctggactgagaggattccctggacct
agaggtgagagaggattccctggaacccatggacaacctggtcttcctggttcccgaggt
ttgccagccacagatagaggactacctggtgatgcagggttcccaggcctgcctggatcg
cctggcttgccaggacagaaaggactggctggaatcataggattacctggatttccagga
gaaagtggttcagagggtatctcgggagcaccagggtttccagggactggtggtttccct
ggtccaaagggtgacccaggggaatcacttggaatttctggtgggttaggaaataaagga
gaacgaggggaccgtggattcccaggtgagaggggaaaagatgggccaatgggtgaacca
ggatacccaggaaccgctggcatggatgggcctaaaggtatcccaggtgacctgggccga
gaaggaccaccaggcctccctggaattgctgggttgcgaggaaatgcaggtctcccaggt
tctccggggcagcctggacctttaggattcatcgggctccctgggagagcaggaccaaaa
ggattccctggatttcctggtttaaatggtctgaacggcttgccgggcacaaaagggtca
cctggaacaccaggtctgagtgaagctggactgaacggccctgcaggacttccaggtcct
aagggtgaagaaggttccccgggctttggcctaggagccccaggactccctgggcagaaa
ggatcatcaggagacacgggtcctccaggtactttgggactgcctggtttaccagggcct
cctggcatctctcttccttcaaatatacctgggagacgtggtgatcctggccgtcctgga
gtggatgggaatccaggccccccaggccctccaggtcctcgagggctctctggcccagcc
tccaatcaaggtgatactggccttccaggtcgccctggagttcctggtttgccaggcata
aagggtgacatgggactccccggtccacctggaattccaggagcttcaggacttaaaggt
gtgaaggctgagccaggctttatggggatgccaggtaaagatgggcttccaggggaccct
ggaattcctgggctgaaaggtgaaactggtagccgaggtttctcaggctcaccaggtgct
ccaggcctagtaccaaaaccagaagaagtcatagttcctccagggctacctggtctgcca
ggaattgatggtgtccctggctatgctggagatcgtggatttcagggaccagatggacag
caaggtccaaaaggtctgtcaggcagatcaggtcaggtgggacgtcctggtttaccgggg
ccagatggcgcagttggggatccaggaaccccaggtattccagggccaccaggattggaa
ggtgtctctggaaagccaggcccatttggtttgcctggaatgccaggtcggggtgtaggc
gttggatacactttggtgaagcacagccaatcggagcagattccgccatgcccaattgga
atgaataagctctgggaggggtacagcttgctgtatgtggaggggcaggaaaaggcgcac
aaccaggatctcggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatt
tactgcaacatctatgaggtgtgctactatgccagccgaaatgacaaatcctactggctc
tccaccactgctcccatccccatgatgccagtgagccgtctggagatcccacagtacatc
agtcgttgctcggtgtgtgaagcaccttcccaggctattgcagtacatagccaggacatt
accatcccacagtgccccgagggctggcgcagcctatggattggatactctttcctaatg
cacactgcagctggcgcagaaggcggaggtcagtcccttgtgtcacccggctcttgtctt
gaggatttccgtgctactcctttcatcgaatgcaacggtgccagaggaacctgccattac
tttgcaaacaaatacagcttctggctgacgacagtcgaacgcacgcagcagttcgtcagt
gctcctccctcagaaactctgaaagcaggacagctccgaacgcgggtcagccgttgccaa
gtgtgcatgaagaacttgtag
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