Mauremys reevesii (Reeves's turtle): 120388083
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Entry
120388083 CDS
T07797
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv03030
DNA replication
mrv03410
Base excision repair
mrv03420
Nucleotide excision repair
mrv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120388083 (LIG1)
03410 Base excision repair
120388083 (LIG1)
03420 Nucleotide excision repair
120388083 (LIG1)
03430 Mismatch repair
120388083 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrv03032
]
120388083 (LIG1)
03400 DNA repair and recombination proteins [BR:
mrv03400
]
120388083 (LIG1)
Enzymes [BR:
mrv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120388083 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
120388083 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120388083 (LIG1)
DNA replication proteins [BR:
mrv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120388083 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120388083 (LIG1)
DNA repair and recombination proteins [BR:
mrv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120388083 (LIG1)
NER (nucleotide excision repair)
Other NER factors
120388083 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
120388083 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
120388083
NCBI-ProteinID:
XP_039365584
LinkDB
All DBs
Position
LG22:8151963..8170090
Genome browser
AA seq
952 aa
AA seq
DB search
MQRPITSFFQPMKAVKEEEKIGLPAEEDSTSQLSEAAVMQRNGLSLCVDSPVKSAAKRPL
RRVLESDSDEEEAVLTARAEMDPIQDRSLERASSKQEPMQTPQSDISADSPSPSSSHSAG
DSPALSDSPAIGHAGIPRRRTARKQIPKRKIELPTSRENNRHEEPSAKRCREEQGSGDEA
GREVKEEAAMEMQEVKGQHSEIELAEVNGTLEEGAVNKGVEDCAGGGAQEKPEPPKPSRA
ISSFFAPKKVPEAKAGKADERAAVEIPPPPTGSATVSSNGSDGTAGSFSKPVVPLDPVEY
NPSKSSYHPVQDACWGHGQRVPYLAVARSFERIEEVSARLKNIETLSNLFRSVIALSPSD
ILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESS
RSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRQSEARYITRSL
GGKLRIGLAEQSVLSAIAHAVSLTPPGQGFPPEVLDAGQGKSAEARKAWLEEQTQILKQT
FCELPSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCE
YKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKSSVRSCILDAEAVAWD
PEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHESF
VETEGEFLFATSMDTCSLDEISEFLDQSIKDSCEGLMVKTLEVDATYEIAKRSHKWLKLK
KDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLE
KHYSFLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEK
GISLRFPRFLRVRDDKKPEEATTSSQVAELYRQQQQIQNQQPAEKAEEEDFY
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccccatcacgtcatttttccagcccatgaaggctgtgaaagaggaggagaag
attggactgccagcagaggaggactcaaccagccagctgtcagaggcagctgtgatgcag
agaaatggcctgagcctctgcgtggactccccagtgaaatccgctgccaagaggccccta
cgccgggtcttggagagcgacagtgacgaggaggaggctgtgctgacagcccgagcagag
atggatcccatacaggacagaagcttagagagagccagcagcaagcaggagcctatgcaa
actcctcagtctgatatctctgcggatagcccctcaccaagcagtagccactccgctgga
gacagcccggccctttctgactcccctgccatcggccatgctggcatccccagacgcagg
accgctcgcaagcagatccccaaacgcaaaatagagctgccaactagcagggaaaacaac
aggcatgaggagccgagtgccaagagatgccgggaagagcaaggctcaggagatgaggca
ggcagggaagtaaaggaagaagcagccatggaaatgcaagaggtgaaaggtcagcattcg
gagatagaactggctgaagttaatggcactttggaggagggggctgtgaacaagggagta
gaggactgcgctggagggggagcccaggagaagcctgagccacccaagcccagcagagcc
atctccagcttctttgcccccaagaaggtgccagaggcaaaggcagggaaggcagatgaa
cgtgcagcagtggagataccacctcccccaactggctcagccacagtgagcagcaatggg
agtgatggcacagctggcagtttctccaagccagttgtgccactggaccccgtggagtac
aatccttcgaagagcagctaccaccctgtccaggacgcctgctgggggcatggtcagagg
gtcccctacctggctgtggctcggtcctttgagcggatcgaggaggtgtctgcccggctg
aagaacattgagaccctgagcaacctcttccgctcagtgatcgccctgtcaccatctgac
attctgccctgcatctacctctgtctgaaccgcctgggccctgcctacaaggggctggag
ctgggcatcggcgagaccatcctcatgaaggctgttgcacaggcaacgggccgccagctg
gatcagatcaaagccgaggcccaggagaagggggatctgggcttagtagctgagagcagc
cgcagcaaccagcgcaccatgttcacgccacccaagctgagtgctgccggggtcttcagc
aagctacaagagattgccaggatgacaggcagtgcttccatgaacaagaagatcgacatc
atcaaagggctgtttgtggcctgccggcagtcggaagctcgctacatcactcggtccctg
ggcgggaagcttcggattgggctggcagagcagtcagtgctgtcagccattgcccatgcc
gtgtctcttactcccccgggacaagggtttcctccagaggtgctggatgctggccagggc
aaatctgcagaggcacgcaaagcctggctggaggagcagacccagatcctcaagcagacc
ttctgtgagttgcctagctatgacatcatagttcccatcctgctggagcatggagtggag
agcctgccgcagcactgcaagatcaccccagggatcccgctgaagcctatgctggcccag
cccaccaagggcattggggaggtgctgaagcgctttgaggaggctgccttcacctgcgag
tacaagtatgacggagagcgagcccagatccacattctggagaatggggatgtgcacatc
tacagtcgcaaccaggaggacaacacttccaaataccctgacatcatcagccgcatcccc
aaggtgaagaagagcagtgtgcggtcgtgtatcctggatgctgaggccgtggcctgggac
cctgagaagaggcagattcaacccttccaggtcctgaccacgcggaagcgcaaggacgtg
gaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctcaat
ggggagtccctagtgaaggagccattctccaggcgccgtcagctgctgcacgagtctttt
gtggagacggagggggagttcctgtttgccacctccatggatacctgcagcctggatgag
atctctgaatttcttgaccagtccatcaaagactcctgcgagggcctcatggtcaagacc
ctggaggtggatgccacgtacgagatcgccaagagatcccacaagtggctgaagctgaag
aaggattacctggaaggtgttggtgacactctggacttggtggtgattggtgcctatctg
ggcaagggcaagcgagtaggcatgtatggtggcttcctgctggcctgctatgatgaggag
agtgaggaataccagagcatctgcaagattgggactggcttcacagaggagagcctggaa
aagcattacagcttcctgaaggaccatgtgctagagaagccacggccctattaccgctgg
gacagcagcactgagccgaaccactggctggcagctgtgcaggtgtgggaagtgaagtgt
gctgacctgtccatctcgcctgtgcacaaggcagctataggcctggtggatgaggagaaa
ggcatctccctgcgctttccccggttcctgcgtgtgcgtgatgacaagaagcctgaggaa
gccaccaccagttcccaggtggctgagctctacaggcagcagcagcagattcagaaccag
cagcctgcggagaaggctgaggaggaggacttctactag
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