Mauremys reevesii (Reeves's turtle): 120391551
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Entry
120391551 CDS
T07797
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv03013
Nucleocytoplasmic transport
mrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120391551 (UPF1)
03015 mRNA surveillance pathway
120391551 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrv03019
]
120391551 (UPF1)
Enzymes [BR:
mrv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120391551 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120391551 (UPF1)
Messenger RNA biogenesis [BR:
mrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120391551 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120391551 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120391551
NCBI-ProteinID:
XP_039371212
LinkDB
All DBs
Position
LG26:2029977..2059560
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AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGHGGPGQGPP
GSGQGPPGQIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEIC
LRYKGDLAPLWKGIGHVIKVPDSSADYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQPNGPATGRGTPKGKTGRGGR
QKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagactctcaccttcctggacaccgaggag
gccgagctgctcggcgctgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggacacgggggcccggggcagggcccgccg
ggctcggggcagggcccgcccggacagatcgaggcacaggttaatggtcctgatgggatc
ctccaaaatggtgcagtggatgataatgtagctaaaaccagtcaactgcttgcagaatta
aactttgaagaagatgaagaagatacctattacaccaaggaccttcctgtgcatgcttgc
agttactgtggcatccatgacccagcttgtgtggtttactgtaataccagcaagaagtgg
ttctgtaatgggcgtggaaatacatctggcagccacattgtaaatcatcttgtgagagca
aagtgtaaagaggtgactcttcacaaagatggtcctttgggagagactgtcttggagtgt
tataattgtggatgtcgtaatgtgttcctccttggcttcattccagctaaggctgactcg
gtagtcgtattactatgcaggcaaccgtgtgccagtcagagcagtttaaaggatattaat
tgggacagctcacagtggcaacctcttatccaagaccgctgtttcctttcctggctggta
aagattccttctgaacaggagcagttgagagcacgtcagattacagctcaacaaattaac
aaactggaagaactctggaaggaaaatccatctgcaacccttgaagacttggaaaaacct
ggtgttgatgaagaaccgcagcatgtcttacttagatatgaggatgcttatcaataccaa
aatatttttggccctctagtcaagcttgaagcagattacgacaagaaactcaaggagtcc
cagacccaagataacatcacagtgagatgggacctgggcttgaacaagaagagaattgct
tacttcactttgccaaagactgactcagatatgcgtcttatgcagggagacgaaatctgc
ctgagatataaaggagacctggcccctttgtggaaaggaattggtcatgttattaaagtt
cctgatagctctgcagattatggtgatgagatagctattgagctgaggagcagtgttgga
gcacctgtggaggttactcataacttccaagtggattttgtgtggaagtctacttcattt
gacagaatgcagagtgctttaaaaacatttgccgtggatgaaacttcagtgtctggctac
atctaccacaaattgttaggtcatgaggtagaagatgtgattattaaatgccagctgcca
aagcgttttacagcgcaaggacttcctgacctcaatcattctcaggtttatgctgtaaag
actgtcttgcagcgtcctctgagccttatccaaggtccccctggtacaggaaaaactgtg
acatcagccactattgtctaccatttagctaggcagggcaatgggcctgtgttggtttgt
gccccaagtaacatagctgtggatcagctcactgagaagatccatcagacagggctaaaa
gtcgttcgtctatgtgctaaaagccgcgaggcaattgattctcctgtatctttcctggca
ttgcacaaccagatcagaaacatggatagtatgcctgagcttcagaaactgcagcagctg
aaagatgaaactggagaattgtcatctgctgatgagaaacgctatcgtgcactgaaacga
acagcagagcgtgaattacttatgaatgcagatgttatttgctgcacatgtgtgggagca
ggtgacccaagacttgcaaaaatgcagtttcgttccattttaattgatgaaagcacacag
gctactgaaccagaatgtatggtgccagttgttctgggagccaaacagctgatccttgtt
ggtgatcactgccagcttggtcctgtcgtgatgtgtaaaaaagctgcgaaggcaggcctc
tctcaatccctttttgagaggcttgtggtgttgggtatccgtccaattcgcctgcaagtg
cagtatcgtatgcaccctgcacttagtgcttttccatccaacatcttctatgaggggtca
ctccagaatggtgttactgcagcggaccgtgtgaaaaagggatttgatttccaatggccc
cagccagataagccaatgtttttctatgtgacacagggtcaagaagaaattgccagttca
ggcacctcttacttaaacaggacggaagctgctaatgtggagaagataactacaaagtta
ttgaaagctggtgccaaacctgatcagattgggattataactccctatgagggccagcgc
tcttacctggtacagtacatgcagttcagcggttccttgcatacaaaactctatcaggaa
gtggaaatcgcaagtgttgatgctttccaaggacgagagaaggactttattatcctttct
tgtgtaagagccaacgagcaccaaggaattggatttttaaatgatcccagacgtcttaat
gtggctctcaccagagcaagatatggagtaattattgttgggaacccaaaagctctgtct
aaacaaccactttggaatcacctgctgaactactacaaggagcagaaggtactggtagag
ggaccactaaacaatctccgagaaagccttatgcagttcagcaagccccgtaaacttgtc
aataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgtgaagct
attattccaggatcagtctatgaccggagcagtcaaggacgcccatcgaacatgtacttc
caaacacatgatcagattgggatgattagtgctggacccagccacgtcactgctatgaac
attcctatccctttcaaccttgtgatgccaccaatgccaccaccaggatattttgggcag
cctaatggaccggccacaggacgtgggacacctaaaggaaagactggtcgtggtgggcgc
cagaaaaatcgttttgggattcctggaactagccagtcaaaccttccaaacagtcaagcg
agtcaagatgtggtgtctcagccattctcccagggtccactgactcagggttatatctcc
atgagtcagccatcacagatgagccaaccaggactctcccagccagaattatcacaggac
agttaccttggtgatgagtttaaatctcagattgatgtggcgctgtcgcaggactctact
taccagggtgaacgtgcatatcaacatggtggagtgacaggactgtcacagtattag
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