Mauremys reevesii (Reeves's turtle): 120393243
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Entry
120393243 CDS
T07797
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv04510
Focal adhesion
mrv04512
ECM-receptor interaction
mrv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120393243 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120393243 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120393243 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mrv04147
]
120393243 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
mrv00536
]
120393243 (COL4A1)
Exosome [BR:
mrv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120393243 (COL4A1)
Glycosaminoglycan binding proteins [BR:
mrv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120393243 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120393243
NCBI-ProteinID:
XP_039373739
LinkDB
All DBs
Position
LG1:complement(111070401..111216745)
Genome browser
AA seq
1705 aa
AA seq
DB search
MTKEEARAIPVWASFTGCRQELISTRITAPVQWELLEAAASKSLSARHDRPDLRMGQACS
GCGKCDCSGVKGQKGERGLPGLQGLIGFPGMQGPEGPPGPPGIKGDTGEPGLPGTKGTRG
PPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGEIGPVGPPGLPGLVGLIGPPGSPG
IKGDPGEVIGFLPSNVLKGEKGYPGHPGLPGIPGLPGLQGPIGPPGITGVPGPPGPPGPK
GEKGQMGPSSQGPKGDKGEQGMEGAPGAQGPASHATEKGSSVVSGEYGDNGEKGDKGSSG
FPGLAIKGEKGEPGTSGPRGKPGKDGEQGPKGQPGEDGGFGVPGVPGDSGPKGDKGAQGL
PGPPGRVIGTGIHDAYGEKGDMGPPGFPGLKGEPGQKGLPGVPGRPGPPGLPSPGITGPP
GFPGERGEKGDQGPPGRSLHGSTGRDGFPGNPGLPGPPGPPGITNGITECQPGEPGDRGL
PGPQGQPGFLGERGDKGDKGDGCAFCDVSGLPGHPGPQGPPGPSGFTGQPGAKGDRGVPG
LKGLEGVPGSPGAPGLIGNPGAKGEPGDIYFDSNLKGDKGDPGFPGQPGVPGREGRPGRD
GLPGLQGPKGASGTIGLKGDRGPPGSSGFPGVRGERGQPGLPGVGTAGPAGDKGEKGFPG
NPGVPGRPGPKGEAGQVIPLPGPPGSDGLPGPPGFSGVQGDRGDPGFPGKPGLPGEKGAL
GQPGIGFPGPPGPKGFPGQPGTSGQPGPQGRPGFDGLPGTPGLPGHKGDPGVGLPGPKGL
PGPQGPAGFPGEKGNAGLPGLRGEQGFPGVPGQPGIQGGPGSAGLPGSQGPPGVPGIGPP
GPPGPPGGPGPQGPKGFPGTKGERGYPGIPGLDMPGPKGDKGSPGQSGLPGLVGLSGEPG
PQGKGGLPGFPGIKGEMGVMGTPGIPGAPGPLGNPGFQGEKGSQGFPGTSGPRGDTGLKG
SKGEIGLPGEPGTMNILDMGNMKGQKGDPGEKGQEGPFGEKGKTGDYGVPGMPGKDGEPG
FPGLPGRKGDQGPPGYPGDPGFPGQKGSIGEMGLPGTPGEKGVPGVPGSPGVPGYPGLQG
AKGDKGELGIPGVGIPGSPGEKGEEGRPGVPGFPGEKGEKGSTGIPGMPGHPGLKGLPGI
AGYPGSPGSQGEKGEKGLSGLDGIPGLKGEAGQPGPQGPSGVPGQKGEQGYDGIPGLPGA
KGDPGIPGRGLPGFPGTKGDKGAKGDVGFPGSPGSPGIPGSKGEAGFVGPQGPSGQQGTP
GLPGRSMGGPKGDRGYPGQPGLSGVPGPMGPPGSPGLEGAKGEKGNTGWPGAPGRLGIKG
DPGFQGIPGSAGLPGSIGQKGDMGPPGVPGFQGPKGSSGFPGLKGEQGDQGFPGSKGLQG
PPGPPGPYQLLKGEPGLPGPVGPAGLKGLPGLPGPKGQQGVTGPEGIPGQPGIPGFDGQP
GQKGEPGPSGPPGPRGAKGPPGPEGLPGSMGPPGTPSVAHGFLVTRHSQTIEEPECPSGT
KLMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLS
TPEPMPMSMAPITGDHIRPFISRCSVCEAPAMVIAVHSQTIQIPLCPEGWMSLWIGYSFV
MHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERNEMFKK
PTPSTLKAGDLRSNVSRCQVCMRRT
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagaggccagggcaataccggtatgggcaagttttacaggatgcagacag
gaactcatctcaacacggatcactgctccggtccaatgggagttactggaagcggcggcc
agtaagtccctcagcgcgcgccacgatcggccggacctgcggatggggcaggcttgttct
ggctgtggaaaatgtgactgcagtggagtaaaagggcaaaaaggtgaaagaggtttgcct
gggctacaaggtttaattgggtttcctggaatgcaaggacccgaaggtccccctgggcca
ccaggaattaagggtgatactggagaaccagggctcccaggaacaaaaggaactaggggc
ccaccaggtgcatcaggatatccaggaaacccaggtcttcctggcatccctggacaagat
ggcccaccaggtccacctggtatcccaggttgcaatggcacaaagggtgaaataggtcct
gttggtcctccaggtttacctggattggttgggttaataggacctccaggatctcctgga
attaagggagacccaggtgaagtgattgggttcttaccatcaaatgtgctaaaaggtgaa
aaaggttatcctggccaccctggactaccaggtataccagggttgccagggctccaaggc
cccatcgggccaccagggattacaggagttccaggtcccccaggcccaccgggacctaag
ggtgagaagggtcagatgggcccgagttctcaaggaccaaaaggtgataagggtgaacaa
ggaatggagggtgctccaggtgcacaaggacctgcctcacatgccacagagaaaggcagt
tcagttgtaagtggggaatatggagacaatggtgaaaaaggtgataaagggagttcagga
tttccaggcttagctatcaaaggggaaaaaggtgaacctgggacatctggcccacgagga
aaacctggaaaagatggcgagcaaggaccaaaaggacaacctggtgaggatggtgggttt
ggagttccaggagtaccaggtgactctggtcctaagggagacaagggcgcacaaggtctt
ccaggacctccaggaagagtaataggtactggaatacatgatgcttatggtgaaaaagga
gatatgggtcctccaggttttccaggattaaaaggtgaaccaggtcaaaaaggtttacca
ggtgtaccaggacgcccaggtcctccaggtttacctagcccagggatcacaggtccacct
ggtttccctggtgagagaggtgaaaagggtgaccaaggtcctccaggacgctctctgcat
ggatcaactggaagggatggttttccagggaatccaggtttgccaggacctccaggacct
ccaggcataacaaatggaatcacggaatgtcagcctggagaacctggtgatcgaggtctt
cctggacctcaaggacaacctggattcttaggagagagaggagataaaggtgataaaggt
gatggttgtgccttttgtgatgtatctgggcttcctggacatccagggccacaagggcca
ccgggtccatcaggctttacaggacagccaggagccaaaggagataggggtgtgcctgga
ctcaaaggtcttgaaggggttcctggttctccaggtgcaccaggactgattggtaaccca
ggagcaaagggagagcccggagacatttactttgattctaatctaaaaggtgataaagga
gatcctggattcccagggcaaccaggtgttcctggaagagaaggaaggccagggagagat
ggcctgccaggtctccagggccctaaaggggcatcgggtacaattgggctgaaaggagac
cgtggtccccctggctcaagtggatttcctggggtacgtggtgaaagaggccagcctggt
cttccaggggttggaactgctgggccagctggtgacaaaggagaaaaaggctttccagga
aacccaggtgtaccaggccgtccagggccaaagggtgaagcaggacaagtcattcctctg
cctggtcccccagggtcagatggtctcccagggccacctggcttttctggagtccaaggt
gacaggggtgatcctgggtttccaggaaaacctggacttccaggagaaaaaggtgctctt
gggcagccaggaataggattccctgggcctcctggccctaaaggtttcccaggtcagcct
ggcacatcaggtcagccagggcctcaagggcgtcctggctttgatggtttaccaggcaca
ccaggtttacctggtcacaaaggtgaccctggagtgggtctcccaggtcctaaaggatta
ccaggcccacagggcccagctggcttccctggagaaaaaggaaatgctggtttgcctggc
ttacgaggagagcaaggatttccaggtgtacctggtcagccaggaatccaaggtggccca
ggttcagctggattaccaggttcacaaggtcccccaggtgtgccaggaataggccctcca
gggcctcccggacctccaggaggaccagggccacagggaccaaaaggatttcctggaaca
aagggagagaggggctacccaggtatcccaggactagatatgccaggaccaaaaggagat
aagggtagccctggccagagtgggctaccaggtttggtaggtttatctggtgaacctggt
ccacaaggaaaaggtggacttccaggctttccaggcatcaaaggagaaatgggagttatg
ggaacccctggaatcccaggtgctcctgggccattaggaaatccaggatttcagggtgaa
aaaggttctcaaggttttccgggtacgtcagggccacgaggtgatactggtttaaaaggg
agtaaaggtgaaataggtctaccaggagaaccaggaaccatgaacatactggacatggga
aatatgaaaggccaaaagggagacccaggagaaaaaggacaagaaggaccatttggagaa
aagggaaaaacaggggattatggtgtaccaggaatgccagggaaggatggtgaacctggc
ttcccaggacttccaggacgaaaaggtgatcaaggccctccaggatacccaggtgaccca
ggatttccaggacaaaaaggatcaattggagaaatgggtttgccaggaacacctggagaa
aaaggtgtaccaggtgtgccaggctcaccaggtgtaccagggtaccctggattacaaggt
gcaaaaggagacaaaggggagttgggtattccaggggttggcattccaggttctccgggt
gagaagggagaagaaggaaggccaggtgttccaggcttccctggtgaaaaaggtgaaaag
ggtagcacaggaattccaggaatgcctggtcatccaggtctcaaaggattacctggcatt
gcaggatatccaggcagcccaggtagccagggagaaaagggtgaaaaaggactctctggt
ttggatggcattccaggtttaaaaggagaagcaggtcagcctggtcctcaaggtccctct
ggtgtccctggacagaaaggtgaacaaggttatgatggaataccaggtttgcctggagca
aagggtgacccaggtattccaggtagaggacttccaggatttcctggtacaaaaggagat
aaaggtgcaaaaggtgatgtgggttttccaggatccccaggaagcccggggattcctggc
tcaaaaggagaagcaggatttgttggtccacaaggtccttcaggccaacagggcactccc
ggactaccagggagatcaatgggaggtcctaaaggagacagaggatacccaggtcaacct
ggactttcaggtgtaccaggtccaatgggaccaccaggatctccgggcctggaaggagcc
aaaggagaaaaaggaaacacgggttggcctggagcacctggaagacttggaatcaaaggt
gatccgggattccaaggcatccctggtagtgctggtttaccaggaagtattggtcaaaag
ggtgatatgggacctccaggagttcccgggtttcaaggtccaaaaggatcttctggcttc
ccaggtctcaaaggagaacaaggtgaccaagggtttcctggctctaaaggtttacaaggt
ccaccaggtcctccaggtccatatcagcttcttaaaggggaaccaggtttacctggccct
gttggaccagctggtctaaaagggctccctggacttccaggtccaaaaggacaacaagga
gtgacaggacctgagggtatacctgggcaacctggcattccaggatttgatggtcaacct
ggtcagaaaggagaacctggtccttctggtcctccaggtccgcgaggagccaaaggtcca
ccaggccctgagggtttaccagggtccatgggcccaccaggcacaccatctgtcgctcat
ggcttccttgttaccagacacagccaaaccattgaagaaccagaatgtccatctggaact
aaactgatgtactatggctactccttactttacgtacaaggcaatgaaagggcacatggt
caggatttgggcacagcagggagctgtcttcgtaaatttagcactatgccattcttgttc
tgcaatatcaataatgtatgcaactttgcatcaaggaatgactattcctactggctgtct
actcctgaacccatgccaatgagtatggcacctatcactggtgaccatatcaggccattc
atcagtagatgctctgtgtgtgaggctcctgccatggtaattgcagttcacagccaaaca
attcaaataccattgtgccctgaaggctggatgtcgctttggattggttactccttcgta
atgcataccagcgctggtgctgagggttccgggcaagctctggcatctccaggttcctgt
ctagaggagttccgcagtgctcccttcatagaatgccatggtcgtggaacttgtaactat
tatgcaaatgcttacagtttttggcttgccactatagagagaaacgagatgttcaagaaa
cctactccttcaactctgaaagcaggggacttgcgctcaaacgttagccgttgtcaagtc
tgtatgagaagaacataa
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