Mauremys reevesii (Reeves's turtle): 120399231
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Entry
120399231 CDS
T07797
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mrv03037
]
120399231 (IFT88)
Cilium and associated proteins [BR:
mrv03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
120399231 (IFT88)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
TPR_19
TPR_6
TPR_14
TPR_7
TPR_16
ANAPC3
TPR_17
TPR_11
ARM_TT21_4th
TPR_CcmH_CycH
ARM_TT21_5th
TPR_9
TPR_10
TPR-S
TPR_15
HAT_PRP39_C
DUF6584
ARM_TT21
HEAT_Nup120
Consortin_N
ARM_TT21_2nd
ARM_TT21_C
Coatomer_E
TPR_21
Motif
Other DBs
NCBI-GeneID:
120399231
NCBI-ProteinID:
XP_039383241
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Position
LG1:45037805..45119340
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AA seq
819 aa
AA seq
DB search
MMQNVHLAPKADEDDLYSGYNDYNPTFDTEDLENDTAFQQAVRTSHGRRPPITAKIPGTS
ASRPLATGFGSKTVLSSSMGRPMTGAIQDGVARPLTAVHAAGYTKAALRGSVFDPLGQAR
GPAPPLEMKNEDTPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR
QREQIASPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNGGRLKVNMA
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVAFIKTGQYTDGICSFEHIMS
TSPNLKAGFNLILCYFATGDREQMKKAFQKLITVPLEIDYDDKYISPNDDPHTNLLIEAI
KNDQLRQMERERKGLAEKYIMTAAKLIAPAIETSFAIGYDWCVEVVKASHYVELANDLEI
NKAITYLRQKDFYQAVETLKMFEKKDSRVKSAAATNLSFLYYLENELAQAANYADLAVNS
DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRIDEALD
CFLKLQAILRNSAQVLYQIASLYEIMEDPNQAIEWLMQLISVVPTDSHALSKLGELYDNE
GDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERAALIQPTQVKWQLM
VASCYRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDMGLKEVQEYVTKLKRVEKL
KEIREQRVKSGRDGSARSRREGSGSGDSGGSAKGERLSAKLRALPGTNEPYESSGNKEID
ASYVDPLGPQTERPKTAARKRMDEDEFADEELGEDLLPE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaatgtccacctggcacctaaagcagatgaagatgatctttattctggctac
aatgactataaccccacctttgacacagaggatttagaaaatgacaccgcttttcagcag
gctgtgagaactagtcatggtagaagacccccaataacagccaaaattccaggcacatca
gcttcacggcctttagctacagggtttgggtcaaagactgtattatcgtcatcaatggga
agaccaatgacaggagctatacaggatggagttgctcgacctctgacagcagttcatgca
gcaggttacactaaagcagctttgagaggttctgtatttgatccccttggtcaagcaaga
ggtcctgctcctcctctagaaatgaaaaatgaagatactccagaagaaaagattagacag
ttagaaaaaaaagtaaatgagttggttgaagaaagctgcattgccaacagctgtggagac
ttaaaattggctctggaaaaggcaaaagatgctggaagaaaggaaagagtgttggtgagg
caacgtgaacaaattgcatctccagaaaacatcaacttagatctcacttactcagttctt
ttcaacttggcaagccaatattctgctaatgaaatgtatgctgaagcactaaatacatat
caagtcatagtgaaaaataagatgttcagcaacggaggcagactgaaggtgaatatggca
aacatttatttaaaacaacgaaactattcaaaagctatcaaattctaccgcatggctcta
gatcagattccaagtgtccataaagaaatgaggattaaaataatgcagaacattggagtt
gcatttattaaaactggccaatacactgatggcatttgttcttttgaacacataatgagc
acatctccaaacctgaaagcaggcttcaacctgatcctttgttattttgccactggagac
cgtgaacaaatgaaaaaagctttccaaaagctgatcactgttccactggaaattgattat
gacgacaaatatatttcaccaaatgatgatccacatactaacctattgattgaagccatt
aaaaatgaccaattaaggcaaatggaacgtgaaaggaaaggcctggcagaaaaatatatc
atgacagctgcaaaattgattgcaccagcgattgaaacctcctttgccataggctatgac
tggtgtgttgaagtagtaaaagcttcccactatgtagagttagccaatgacctggaaata
aataaagcaattacatatttgaggcaaaaggacttctatcaggctgtggagactttaaaa
atgtttgaaaaaaaggatagcagagtaaaaagtgcagctgcaacaaacctttcatttctt
tattatttggagaatgaattagcacaagcagccaactatgcagatttagctgtgaattct
gatagatacaacccatcagctctcactaataaaggaaatactgtgtttgcaaatggagac
tatgaaaaagcagcagagttttataaggaagctctaaggaatgattcctcatgcactgaa
gcactttacaatataggtttaacatataaaaagttaaacagaatagacgaggctttggat
tgttttctgaaacttcaggcaatccttcgaaacagtgcccaagttctctaccaaatagca
agcttatatgaaataatggaggatcccaaccaagccatagagtggctcatgcagcttatc
agtgtagttccaactgattcacatgcactgtcgaaactaggggaattgtatgataatgaa
ggcgataaatcccaagcttttcagtattactatgagtcatatcggtatttcccttcaaac
attgaggtcattgaatggcttggagcctattacattgatacccagttttgtgaaaaagcc
attcagtactttgagagagcagcacttattcaaccaacacaagtaaaatggcaattgatg
gttgctagttgttacagaagaagtggtaactaccaaaaagctctagatacatataaggag
atacacagaaaatttccagagaatgttgaatgtctacggttcttagttcgtctgtgcaca
gatatggggctgaaagaagttcaagaatatgtgacaaagctcaagagagtagaaaaacta
aaagaaataagggaacagcgtgttaaatctggcagagatggcagtgcgcgtagccgcaga
gaagggagtggtagcggggatagtggcggtagcgctaagggggaacgactaagtgccaag
ctaagggctttgcctggaacaaatgagccttatgaaagcagtggtaataaagaaatagat
gcttcctatgtagatccacttggaccacaaacagagaggccaaaaactgcagcaaggaaa
agaatggatgaagatgagtttgctgatgaagagttaggagaggatttgcttccagaataa
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