Mauremys reevesii (Reeves's turtle): 120405164
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Entry
120405164 CDS
T07797
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv03420
Nucleotide excision repair
mrv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120405164 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
120405164 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mrv04121
]
120405164 (DDB1)
03400 DNA repair and recombination proteins [BR:
mrv03400
]
120405164 (DDB1)
Ubiquitin system [BR:
mrv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
120405164 (DDB1)
DNA repair and recombination proteins [BR:
mrv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120405164 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120405164 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
120405164
NCBI-ProteinID:
XP_039394419
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All DBs
Position
LG4:118452451..118474188
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSSEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFHPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVSLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVT
QEPKALVSEWKEPKGKNISVASCNSSQVVVAVGRALYYLEIQPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYVKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccaacggccgtgaacggctgcgtcacc
gggcacttcacttcctcggaggacctgaacctgctgatagcgaagaacacccgccttgag
atctatgtggtcacggcagaggggctgcggcccgtcaaggaggtgggcatgtatggcaag
atcgcagtcatggagcttttccacccaaagggggagagcaaggacctgctgttcatcctg
acagccaaatataatgcttgtatccttgagtacaagcaaagtggtgagagcattgatatc
atcacccgagcccatggcaacgtgcaggatcgcattggtcggccctcagaaacgggtata
attggcatcattgacccagagtgtcggatgattggattgcggctctatgatggcctcttc
aaggtcattcctctggaccgggacaacaaggagttaaaggcctttaacatccgcctggag
gagctgcaggtcatcgatgtcaagttcctctatggctgccaggctcctaccatctgcttt
gtttaccaggatccccagggccgccatgtcaaaacgtacgaggtatccctgcgagagaag
gaattcaacaagggtccctggaaacaggagaatgtagaagctgaagcgtccatggtaatt
gcagtgcccgagccctttggaggagctatcatcattgggcaagagtccatcacctaccac
aatggcgataaatatctggctatagccccacccatcataaagcaaagtacaatcgtgtgc
cacaaccgtgtggatcccaatgggtcccgttacctcctgggggatatggagggccgtctc
ttcatgctgcttctggagaaggaagagcagatggatggcacggtcagcctgaaggacctg
cgtgtggagctgcttggagagacatccattgcagagtgcctgacctacctagataatggt
gttgtctttgttggctctcggcttggggactcccagctcgtgaagctcagcgtggacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaacctgggccccatcgtg
gacatgtgtgtggtggatctggagagacagggtcaagggcagctggtcacgtgctctggt
gcctttaaggagggctccctgaggatcatccggaacgggattgggattcacgaacacgcc
agcatcgacctgccagggattaaaggcctttggcccctgaggtcagattcacatcgtgaa
accgacaacaccttggtgctgtcctttgtaggccagaccagggttctgatgttaaacggg
gaggaagtggaggaaactgagttgacaggatttgtggatgatcagcaaaccttcttctgt
ggcaatgtggcccatcagcaactgatccagatcacctctgcctccgtgcggctggtcact
caggaacccaaagccctggtgagtgaatggaaagagcccaaggggaagaacatcagcgtg
gcttcctgtaacagcagccaggtggtggtggctgtggggcgagcactctactacctggag
atccagccccaggagctcaggcaaataagctgcacagagatggagcacgaggtggcctgc
ctggacatcaccccactgggggactctaatggcatgtcccctctgtgtgccatcggcctc
tggactgacatttcagcccgcatcctaaagctgccctcgtttgagctgctgcacaaggag
atgctgggaggagaaatcattccccgctccattctgatgaccacctttgagagcagccac
tatctcctctgtgccctaggagatggggctctcttctactttgggctcagcattgagaca
ggtttgctgagtgaccgtaagaaagtgacgctgggcacccagcccactgtgctgaggaca
ttccgttcactctctaccaccaatgtctttgcctgctctgaccgccccactgtgatctac
agcagtaaccacaagctggtcttctccaacgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcggatggctaccccgacagtctggcattggccaacaacagcaccctgaca
atcggcaccattgacgagatccagaagcttcacatccgcacggttcccctctatgagtca
cccaggaagatctgctaccaggaggtttctcagtgctttggcgtgctttcgagtcgcatt
gaggtgcaggatgccagtgggggcaccactgcactgagacccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttttccagcagcaccgccccgcacgagaca
tccttcggagaggaggtggaggtgcacaatctactcatcatagaccagcacacctttgaa
gtgctccacgctcaccagttcctgcagaatgaatacgccctaagcctggtctcttgcaag
ctgggcaaggaccccaacacgtacttcatcgtgggcacggccatggtgtatcctgaggag
gctgagcccaaacagggtcgcattgtagtcttccactactcagatgggaaactgcagagt
ctggctgagaaggaagtgaaaggggctgtgtattccatggtggagttcaacggcaaactc
ctagccagcatcaacagcacggtgcgtctgtatgagtggacggcagagaaggagctgcgc
acagagtgtaaccattacaataacatcatggctctctacgtgaagaccaagggggacttc
atcctggttggagatctgatgcgctctgtcctgcttcttgcctacaagcccatggagggt
aactttgaggagattgctcgagacttcaacccaaactggatgagtgccgtggagatcttg
gacgatgacaacttcctgggagcagagaatgcttttaacctgtttgtgtgccagaaggac
agcgctgccacgactgatgaggagcgccagcacttgcaggaagtggggctgttccacctg
ggggagtttgtcaacgtgttctgccatggctccctggtcatgcagaacctgggcgagacg
tccacgccgacgcagggctcagtgctcttcggcacggtcaacggaatgatcgggctggtg
acgtcactgtcagaaagctggtacaacctcctgctggatatgcagaacagactcaataaa
gtcatcaagagtgtgggcaagatcgagcactccttctggagatcatttcacactgagcgc
aagacagagccagccacaggattcattgacggtgacttgattgaaagcttcctggacatc
agccggcccaaaatgcaagaggtggtagcaaacctacagattgacgatggcagtggcatg
aagagagaggccaccgtggatgacctgataaagatcgtggaggagctgacccggatccat
taa
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