Mauremys reevesii (Reeves's turtle): 120405203
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Entry
120405203 CDS
T07797
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Pathway
mrv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120405203 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrv03021
]
120405203 (PCF11)
03019 Messenger RNA biogenesis [BR:
mrv03019
]
120405203 (PCF11)
Transcription machinery [BR:
mrv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120405203 (PCF11)
Messenger RNA biogenesis [BR:
mrv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120405203 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
120405203
NCBI-ProteinID:
XP_039394532
LinkDB
All DBs
Position
LG1:25426842..25457794
Genome browser
AA seq
1749 aa
AA seq
DB search
MSGPESSAGGAETREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPAPTCTVS
SSGTSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGATTMGSVQAPSSKQHVSQTPHMTVKAPHQASVQTEKNRPSPSSQFHDVKVVNRDPRLN
RMAQHSSHAKDQSHRKEFLSSISQSDIKANKTVQAEKQNLSKQEKLKSSEKTQKKELDQL
DAKSKSLSPLKSKLSHTKDVKSQECESMKVSEISKRDPRLKKHLQEKPDGKDDDTKEKRK
SMERKEKEEHKTSEHRPVGSRNKVINGIVQKQDSITEESEKQSGKLGRSSNRKRSRSRSP
KSRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKLRQSGPKQSHVEEFTLTTREERNS
NKRNLKQDARDPRRLKKTQEDRPQETANQHSTKSTPEPKENVENWQGSKSSKRWKSGWEE
SKNPQQNDEHQGPSKSPHQRHREIWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASK
RELLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLL
SDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDDILGYDLTNALLSGIECEQTKGKRGGQF
DRKEQFGERSRRHSPISGSRPYADDLSPLESRRRHDEQNSSKGTRSSKNFDPYDSWGESD
EFRDALRQQGKSIPEFQKIDGDGFCKFDNREERQLVGQSGVREEPRSPFSERFKRPRYED
PEKTSFIESPGSRFGGIDVKQRLGALMEDRPLFDGSPRQPAARGGGDGQAGHFVDGPSNN
SSPRIEGPPVQAPMRFEGPLGQVGGGAASQFDGPLGQAGGGGALRFDGPPGQIGTLRFEG
PLGQVGAGGALRFESPLGQVGGTLRFEGPVGGRRLEGPAGQTMGGLRFEGPHGQPSGGLR
FEGPHGQPMGPHGQPGGGLRFEGPHGQPMGPRGQPGSGLRFEGPHIQPMGPHGQPGSGLR
FEGPHGQPVGPHGQPGGGLRFEGPHGQSVGPHVQGGGGLRFEGPHVQPGLGPRFEGPSVQ
TGGGLRFEGPLGQTGPRFDGCHSSRFDSQPGQLSLLQRFDGLHGQPGPRFERAPGQQTPP
RFDGPPGQQPRFDTPVPQRFEGPQHQPGSRFAMPLGLQGPRFENVANAPASRLETVSYGQ
TGPYSEHPNQTYNGPSHGMQFQRPEMFDASQGPNFNGPPGPGAQNFPNPLNRASGHYFDD
KNLQGPQYGNFNTMPNSMSVGNTQQPQQVPGLSVSSQPGPYSQGQTYLPVLAQNPGNFQN
QAGSLPLSYPDNHLGQLDVNELFSKLLSTGILKVSKTTDSTSAQVNETSTQPAPEEEEDD
QEQSEDQDIPDLTNFTVEELKHRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHY
RQNRTEKDISRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKE
KEFQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTS
SFDCTPSPSKTPVENPLNIMLNIVKQEIQEPCNSPKVKEEPVDTPATCMEESTPASTDIK
TETDKVEPV
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggagagcagcgctggcggcgccgagacccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctccttctacagagaagctccctgttatgtatcttatggattccattgtc
aagaatgttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgaaattttccctttgaagaaactctatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctacccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgcctgaggaacctcctgcacctacctgtacagtcagt
tcatctggtacctcaactcctccagctgttcctgaaatacaaaagaatttgacccaagag
caactaataagacaacaactgctggcaaaacaaaaacagttgttggaacttcaacagaaa
aaattagagctggagctagagcagactaaagcacagttggcagtttctcttagtgttcaa
caaggggcaaccaccatgggttcagttcaagcaccttcttccaaacaacatgtttcacag
actcctcatatgacagtcaaagctcctcaccaggcttctgtgcaaactgaaaaaaacaga
ccatctccatcttctcagtttcatgatgtcaaagtagtaaacagagatcctcgtcttaat
aggatggctcaacattcttctcatgctaaagatcaaagtcataggaaagaatttctatct
tccataagtcaatctgatatcaaggcaaacaaaacagtgcaggctgaaaaacaaaatttg
tcaaagcaagaaaagttaaaatcaagtgagaaaacacagaagaaagaacttgatcagtta
gatgcaaaatctaagtcactgtcccctttgaaaagcaagttatcccatactaaagatgtt
aaaagccaagaatgtgaaagtatgaaagtatctgaaattagtaaaagagatccaaggtta
aaaaagcatcttcaggagaagccagatggtaaagatgatgatacaaaagaaaagagaaaa
agtatggagagaaaagaaaaagaggaacataagacatctgaacacagacctgttggcagc
agaaataaagtaattaatggcattgttcaaaaacaggactctattacagaagagtcagaa
aaacagagtggaaaacttgggaggtcaagtaataggaaaaggtcccgatcacgctctcct
aagtctcgatcgccatctacccattcaccaaagagaagagagaggagatcacccaaaaga
agactgaggagtttgtctcctacttcctcgactcctaaaattggaaagctccgtcaatca
gggcctaagcaatctcatgttgaagagtttacactaactacaagggaagaaagaaattct
aataagaggaaccttaaacaggatgcacgagatccaaggagattgaaaaaaactcaagaa
gacagaccacaggaaactgccaatcagcattctacaaagtccactccagaaccaaaggag
aatgtggaaaattggcaaggttccaaatcaagcaaaagatggaaatctggttgggaggaa
agtaaaaatccacaacagaatgatgaacatcaaggacctagtaaatctcctcatcagagg
cacagggagatctgggcggccagtaaaggaattttgtcacctcgagccccaaagcaacag
catcgattaagtgtggatgccaatttgcagattcccaaagaactgacttctgcaagcaaa
cgagagctacttaaaaaggcaaatgaacgtctgacatctggggaaataacacaagatgag
tttcttgttgtggctcatcagattcgtcaactgttccaatatcaggaaggaaagcacaga
tgcaatgtgtgggatagtcctacagaagaaaaatgtggtatgaagaagaaaccccttctg
tctgatgctgaattaacgtattatgaacataaagctaaactgaaaagaacacaagttcag
cattcatttccaagacttgatctgttagatcctgatgatattttagggtatgatttgact
aatgcattgctttctggaatagaatgtgagcaaacaaaaggtaaacgtggaggacaattt
gacagaaaagagcaatttggagaaaggtcaagacggcattctcctataagtggcagtaga
ccgtatgctgatgatctttcaccactcgagagccggcgaagacatgatgagcaaaattct
tccaaaggaacacgaagttctaaaaacttcgatccttatgatagctggggagaatcagat
gaatttagagatgcactcaggcaacaagggaaaagcataccagagtttcaaaaaattgat
ggagatggattctgcaaatttgataatcgtgaagaaagacagctggttggacagagtggt
gttcgagaggaaccgaggtccccattcagtgaacgtttcaagagacctagatatgaagat
ccagagaaaacatcatttatagagagtccaggatcaagatttggaggcattgacgtaaag
cagagattaggtgcactcatggaagacagaccgctatttgatggctcacctagacagcct
gctgcaaggggagggggagatggacaagctggtcattttgttgatgggccttctaataat
tcaagccctagaattgaagggccacctgtacaggctcctatgaggtttgaggggcccctt
ggtcaggtgggaggaggagctgcctcacagtttgatgggccactgggacaggcaggggga
gggggtgccctaagatttgatgggccaccagggcagataggcaccctcaggtttgagggg
cccctggggcaagtgggtgcagggggcgcactaaggtttgaaagccctctggggcaagta
gggggtactttaaggtttgaggggcctgtgggtggtcgcaggttagaggggcctgcaggc
cagactatgggtggtctcagatttgaggggcctcatggtcagccatcgggtggtctcagg
tttgagggaccccatggtcaacctatggggcctcatggccaaccagggggtggactcaga
tttgagggaccccatggtcaacctatggggcctcgtggtcaaccagggagtggtctcagg
tttgaggggccacatatccaaccaatggggccccatggtcaaccagggagtggtctccgt
tttgaggggccacatggtcagcctgtagggccacatggtcaaccaggaggaggtctgcgt
tttgaggggccccatggtcagtctgtagggccacatgtccagggagggggtggtctcaga
tttgaaggtccacatgtccagccagggcttggtcctaggtttgagggtccatcggtccag
acgggaggtggacttagatttgaagggcctttgggtcagactggtccaagattcgatggc
tgtcattcgtccagatttgatagtcagcctggtcagctatcacttttgcaaagatttgat
ggattacatggacaacctggcccaagatttgaaagggcacctggtcaacagacacctcct
cggtttgatggaccacctggtcagcagccacgatttgatacaccagtacctcaaaggttt
gaaggtccacaacaccagccaggttcaaggtttgcaatgccccttggtcttcaaggtcca
aggtttgaaaatgtagctaacgctcctgcctcaagactggaaacagtatcttatgggcaa
actggtccatacagtgaacatcccaatcagacttacaatggaccatcccatgggatgcag
ttccagagacctgaaatgtttgatgcctctcaaggaccaaattttaatgggccacctggc
cctggagcacagaactttcccaatccacttaacagagcatctggacattattttgacgac
aagaatcttcagggtcctcaatatggaaacttcaataccatgcctaattctatgtcagta
ggaaatactcagcaaccacagcaggttcctggtctatctgtatcttctcaacctggacct
tacagtcaaggacaaacgtatttaccagtacttgcacaaaatcctggaaactttcagaat
caagcagggtcccttccactttcatatcctgataatcaccttggccagcttgatgtaaat
gagttgttctctaaactgctttcaacgggaatcctcaaagtgtcaaaaactactgattcc
acttcagcacaagtgaatgaaacttctacccaaccagctcctgaggaggaggaggatgac
caagagcagagtgaagatcaagacatcccagacctcactaactttacagttgaagaacta
aaacaccgttatgatagtgttataaatcgactgtacactggtattcagtgttactcctgt
ggaatgaggtttacaacttcacagactgatgtatatgcagatcacttggattggcattac
cgacaaaatcgcactgaaaaggacattagcagaaaagttactcacaggaggtggtactac
agtttaacagactggatagaatttgaagaaatagctgatctagaagaacgtgcaaagagc
cagttctttgaaaaagtacatgaagaagttgtattgaagacacaagaagctgctaaagaa
aaagagtttcaaagtgttcctgctggaccagctggagtggatgagagctgtgaaatttgc
caagagcaatttgaacaatattgggacgaggaagaggaagagtggcatctaaagaatgct
attagagtagaggaaaagatttaccatccatcatgttatgaagattaccaaaagacatca
tcatttgattgtacaccatctcccagcaagacccctgtggaaaacccactaaatattatg
ttgaacattgtcaaacaagaaatacaggagccatgtaacagtcctaaagtcaaagaagaa
cctgtcgacacccctgctacttgtatggaagagagcacacctgcgtctacagatattaaa
acagaaactgataaggttgaaccagtttaa
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integrated database retrieval system
