Mauremys reevesii (Reeves's turtle): 120407061
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Entry
120407061 CDS
T07797
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
mrv
Mauremys reevesii (Reeves's turtle)
Brite
KEGG Orthology (KO) [BR:
mrv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mrv00536
]
120407061 (COL25A1)
Glycosaminoglycan binding proteins [BR:
mrv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120407061 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120407061
NCBI-ProteinID:
XP_039398330
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All DBs
Position
LG5:30343475..30781982
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AA seq
718 aa
AA seq
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MEPTMKCLSQWDYSTSHLVLPPMGGGKTAASTAWKSMLGTSQETKRQDGNGEPSCLGGQR
CCPSWTLPSSSLLAAFLSVVAVASCVYLGVKTSDLHARVSAIESAQGDFSAAAAASYQLL
PGFSLDQLNSMMQEKVERLLAQKSYEHLAKIRIAREAPPECNCPAGPPGKRGKRGRRGET
GPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPP
GPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGWMGPQGPPGQKGSVGVPGVPGIDGHMGEP
GLPGTVGERGAPGLKGDPGERGEKGDAGENGSKGDMGEKGDPGSSAAGIKGEPGESGRPG
QKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEVGPPGKGERGEPGVPGP
KGKSGESGNRGPKGSKGDPGDKGDSGAIGPRGPPGQKGDQGATEIIDYNGNIHEALQRIT
TLTVTGPPGPPGPQGAQGPKGEPGSQGTPGAEGEQGPKGSKGDVGESGIPGEKGGIGLPG
LPGANGMKGEKGDVGLPGPQGPSIIGPPGPPGPHGSPGPMGPHGLPGPKGASGLDGKPGP
RGMDGPVGPHGPAGPKGDRGEKGAVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGE
KGEKGFRGIKGEKGEPGQPGLDGLDAPCQLVQYFSFLPTLHAIPLYIVSHSQCKVVFF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaacaatgaagtgtttatcccagtgggactactcaacatcacacctggtattg
cccccaatggggggaggaaaaactgctgcatctacagcgtggaaaagcatgttggggaca
agccaagaaaccaaaagacaggatggcaacggggagccgagctgccttgggggacagcgc
tgctgtcctagctggactctgccctccagttcgctgctggctgctttcctgtcagtggtg
gctgtagcctcctgtgtgtatctgggggtgaagaccagtgatctacacgcgagggtctct
gccatcgagagcgcccaaggggacttctctgctgctgctgctgcttcttaccagctgctg
cccggcttctccctggatcagttaaattcaatgatgcaagaaaaagtggagcgacttcta
gctcagaaatcctacgagcatttggcaaaaataagaatagcaagagaagcgcctccagag
tgcaactgcccagcaggccctccagggaaacgaggtaagaggggcagaagaggagagacc
ggacctcctggtcctcctggtccaaaaggcgagaagggagatcaaggtgatcagggccct
cggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaa
cgccgcctcattaagggtgatcaaggacaagctggaccccctggtcctccagggccacca
ggacccagaggtcctccaggagacactggcaaagatggcccccgagggatgcctggagta
ccgggagagccaggaaaaccaggtgaacaagggtggatggggcctcagggacctccagga
caaaagggttctgttggagtgcctggtgttccaggaatagatggacatatgggtgaacca
ggtttgcctggtacagtaggagaacgcggcgcaccagggcttaagggtgaccctggagaa
cgaggagaaaagggtgatgctggagaaaatggatccaaaggtgacatgggtgaaaagggt
gatcctggatcttctgctgcaggaattaagggagaacctggagaatctggtcggccagga
caaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggtgaacca
ggtttcattggtccacagggagaacctggattaccagggttaccaggaacaaagggtgaa
agaggagaagtagggcctcctggaaagggtgagcgaggtgaacctggagttcctgggcca
aagggaaaatcaggcgaatctggaaatagaggcccaaaggggtcaaagggtgatcctgga
gacaaaggtgattcaggagcaataggtcctaggggcccgcctggacaaaagggagaccaa
ggtgcaacagagataattgactacaatggcaatatccatgaagctctgcagaggattacc
accctaactgtcacgggtccgccagggccacccggacctcaaggagcacaaggcccaaag
ggtgaaccaggatcccaaggaactccaggagctgaaggggaacagggtcctaaaggctca
aagggggacgtgggtgagtctggcataccaggagaaaagggaggaattggactcccaggt
ttaccaggagccaatggtatgaaaggagaaaaaggagatgttggtttgcctggtcctcaa
ggtccttctatcataggacccccaggaccaccagggccgcatgggtcaccaggccctatg
ggaccccatggactgcctggcccaaagggagcatctggcttagacggaaagccaggaccc
cggggtatggatggcccagtcggtccacatggcccagcaggtcctaaaggagatagaggt
gaaaagggagctgttggtgaccctggacccagaggaccatatggtttgcctggcaaagat
ggcgagcctggccttgatggtttccctggtcctcgaggagaaaagggtgatctaggcgaa
aagggagaaaagggattccgtggaattaagggggaaaaaggggagccaggccagccaggc
ctggatgggctggatgccccttgccaattggtacagtatttctctttcctaccaaccctg
catgcgattcctttgtatatagtcagtcattctcagtgtaaagtggtgtttttctga
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