Marinobacter sp. RI1: MspRI1_04820
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Entry
MspRI1_04820 CDS
T10737
Name
(GenBank) helicase C-terminal domain-containing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mrx Marinobacter sp. RI1
Pathway
mrx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MspRI1_04820
09124 Replication and repair
03420 Nucleotide excision repair
MspRI1_04820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrx03021
]
MspRI1_04820
03036 Chromosome and associated proteins [BR:
mrx03036
]
MspRI1_04820
03400 DNA repair and recombination proteins [BR:
mrx03400
]
MspRI1_04820
Enzymes [BR:
mrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MspRI1_04820
Transcription machinery [BR:
mrx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MspRI1_04820
Chromosome and associated proteins [BR:
mrx03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MspRI1_04820
DNA repair and recombination proteins [BR:
mrx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MspRI1_04820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BFN12471
LinkDB
All DBs
Position
complement(538549..540801)
Genome browser
AA seq
750 aa
AA seq
DB search
MKVAVRTLCEFAARHGDLDFRYTPAPTAEEGIAGHQAIQSKRGYGYKSEFSVTGLVLGME
LSGRADGYHPHKNRLEEIKTHRGDVSRIRLHQRALHRAQLRAYGALLCRQENRKSVELAL
VYYDIGRDKETLLTETAKADELWQELETLCGLYKAWAEQEEHHREQRDALLANLRFPFPD
FRPRQRQLAETVYKNSVKAGTLLLEAPTGLGKTLGTLFPALMAMPAARQDRLFYLTCRNT
ARQLALDAVYKLQHARDELQPWPLRTLELVSKDDACEHPDKACHGDSCPLAKGFFDRLPD
ARAEAVQSKEPLTQETLANIAAGHDICPYFLAQEMVRWSDLVIGDVNRLFDQSALLHGLI
RQNHWQASVLVDEAHNLVDRARGMYSVQLEQQRLLKLKKTAPKPVKAALERTARAWQALI
RDHGEQAQPVFLPILPSQLLGALQAMVSVITDYLADNPPDLALQEVMFESVAFMKLADSF
GDHSLCEFQRSGRGRASLTIQNLIPADFLIERFKAAHSVLLFSATLSPGVYYRDLLGLPE
DARFTSLPSPFSAGQLKVEFTPGISTRQVHREASLQPIAELIAKQYRARPGHYLAFFSSF
KYAKEVSDALAKQAPDIPQRSQQPGMSAEQRRQFLADFRKAEGSIAFAVLGGVFSEGIDL
PGDQLIGAFVATLGLPPFDAWHEILKDRLQQRFGEGYNYTYLIPGLQKVAQAAGRVIRTP
EDRGVIWLIDDRFLKRPVRGLLPTWWFTNT
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagttgctgtccgcaccctgtgtgagttcgccgcccgccacggcgacctggatttt
cgctacactcctgcacccaccgccgaggagggcatagccggccatcaggccatccagtca
aagcgtggctacggctacaaaagcgagttttcagtgaccggtctcgttctcggaatggag
ctgtccggccgggctgatggttaccatccgcacaagaaccggctggaagaaatcaagact
caccggggcgatgtgtcccgcatccgccttcaccagcgggctttgcaccgcgcccagtta
cgggcctatggcgctttgctgtgccggcaggaaaaccgcaagagcgtggaactggcgctg
gtctactacgacatcggccgggacaaggaaacgttgctcaccgaaaccgccaaagccgac
gagctctggcaggagctggaaaccctgtgtggtctgtacaaagcctgggccgagcaggaa
gaacaccatcgggaacaacgagacgccctgctggccaacctgcgctttcccttcccggac
tttcgcccccggcaacggcagctggcggaaaccgtgtacaagaactcggtcaaagccggc
accctgctgctggaagcgcctaccggcctgggcaaaaccctgggtaccctgttcccggcc
ctgatggcgatgcctgccgcgaggcaggaccggctgttctacctcacctgccgcaacacc
gcccggcagctggcgctggacgctgtgtataagttgcagcatgcccgggatgagttgcag
ccctggcctctgcgcaccctggaactggtatcgaaggacgacgcctgcgaacacccggac
aaagcctgccacggcgactcctgcccgctggcaaagggcttcttcgaccgcctgcccgat
gcccgggccgaggcggtacagagcaaggagccgttaactcaagagacattggcgaacatc
gccgccggtcatgatatttgcccctacttcctggcccaggaaatggtccgctggagcgac
ctggtgattggtgatgtgaaccggctgttcgatcagtcggccctgctgcacggcctgatt
cgccagaaccactggcaggccagcgtgctggtggacgaagcccacaatctggtagaccgg
gcccggggcatgtactcggtgcagctggaacagcagcgcttgttgaagctgaaaaaaacc
gccccgaaaccggtgaaagccgccctggaacgcaccgctcgggcctggcaggcgctgatc
cgggatcacggcgaacaggcccagccggtgttcctgccgattctgccgtcgcaattgctg
ggtgccctgcaggcgatggtctcggtgatcaccgattacctggctgacaacccgccggac
ctggccctgcaggaagtgatgttcgaaagtgtggccttcatgaaactggcggacagcttt
ggtgatcattccctgtgcgaattccagcgcagcggccgtggccgggccagcctgaccatc
cagaacctgatcccggcggatttcctcattgagcgcttcaaagccgctcactcggtgctg
ctgttctccgcaaccctcagccccggcgtgtattaccgggacttgcttggtttgccggaa
gacgcccgcttcacgtccctgcccagcccgttcagcgccggacaactgaaggttgagttc
acgcccggcatcagcacccggcaggtgcatcgtgaagccagcctgcagcccatcgccgaa
ctgatcgccaaacagtaccgggcacggccgggccactacctggcgttcttcagcagcttt
aaatacgccaaagaggtgagtgatgcgttggcaaaacaggcacctgatattccccagcgt
tcacaacaaccggggatgagcgcggagcagcgtcggcaattcctggcggactttcggaag
gctgaaggcagcatcgccttcgcggtgctcggcggcgtgttcagcgaaggcatcgacctg
cctggtgaccagctgattggcgcctttgtggctacccttggcctgccaccgtttgatgcc
tggcatgaaatcctcaaagaccgtctgcaacaacgatttggcgaaggctataactacacc
tacctgatccccggcttgcagaaagtggcccaagccgctggccgggtgatccgcacaccg
gaggaccggggggtaatctggctgattgatgaccgctttctgaaacgaccggtgcggggc
ctgttgccgacctggtggttcaccaacacctga
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