Marinobacter sp. RI1: MspRI1_23990
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Entry
MspRI1_23990 CDS
T10737
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mrx Marinobacter sp. RI1
Brite
Enzymes [BR:
mrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MspRI1_23990 (hrpA)
Messenger RNA biogenesis [BR:
mrx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MspRI1_23990 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
BFN14388
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Position
complement(2667380..2671318)
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AA seq
1312 aa
AA seq
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MSLQLLMTDNTRSETPVDSRAAVKAMMSQLDACNQQEAARIIRRVSRCKGNPGNKDLEKM
AQWLDQGLDKVRKRQALHKPATFPAGLPVSDRVEDISDAINNHQVVIIAGETGSGKTTQI
PKICLNLGRGTRGLIGHTQPRRIAARSVSSRIAEELGETVGQQVGYQVRFTDNTSESSRV
KVMTDGILLAEVQHDRFLDRYDTLIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSA
TIEVERFSEFFNEAPVIEVSGRTFPVDIRYRPLVGDEDDRDQGWTDGVLSALDEIEQHER
QEKQPPGDVLVFLPGEREIRALSKVLRHADLRHTEVLPLYSRLSNQEQNRVFQGHKGRRI
VLSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVA
PGICFRLYDETDFLNRPEYTDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQVND
GYKLLEELSAVDDKRRVTRLGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSVQD
PRERPQDKQQAADQAHAPFNDKESDFATLLNIWNWFEEQRQELSQNQLKKLCQKTFLSWM
RMREWRDIHRQLTLICREQKLTLNNQPANYDAVHKAILAGLLGQVAVKVEKREYLATRNR
KVMIFPGSKVGKTAPKWIVAAEIVETSKVFARMVAAIQPEWVEPLAGHVVKHHYFEPHWE
QKRAQVMGYEKVTLYGLDVVPKRRIPYAKVDPAECRNLFIRRALVEGDFQSRAPFIARNR
EMLDTVENLEKKTRRRDLLVDDEVLVAFYDQRLPSDIVSGRHFESWWKGLSAEELKKLEL
TEADVLQRPLDETSAQQYPDYLEWEGVKYPLSYEFEPTSERDGVTLNVPLMALRQIPARR
LEWLVPGLLREKCIALVKGLPKALRRNFVPVPDFVDAALANLQPGNEPLAIKLGEQLRRM
TGVQIDPDAWPEEELPRHLRMNLRVTGDKGKVIAESRDTDELQARLEGRAEEALASATRD
EPGKKQAGEYTDWQFGNFPEQVQTEKGGMQVTVYPALEDLGNKVRASRCLDKLTAEDAHR
RGVARLIVNRFGNTLADLERKLPRFKQSALMFAPIGQAKGLLDDLVLSTVMQHFLADQLP
RTEQAFAELFDLHRGDFIPALEAADERLFQAMNGYQKVAKQLKGKINLALAASMADLKFQ
LQHLVYPGFLVNTPAQWLERFGTYFEAADIRLEKMAREMGREREFLHTIEPLWARYAAKL
EQQKRQGVRDPELETYRWMMEEFRVSFFAQQLGTVMTVSAKRLDKQWEKTRI
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcagctgttaatgactgacaacactcgttccgaaactcccgttgattcccgg
gccgctgtcaaagcgatgatgagccagctggacgcctgcaaccagcaggaggccgcccgc
atcattcgtcgtgtaagccgttgcaagggtaaccctggtaacaaggacctggaaaagatg
gcgcaatggctggatcaggggctcgacaaggtgcgtaagcgtcaggcattgcacaagccg
gcgacctttcccgccgggttgccggtcagcgatcgcgtcgaggacatcagtgatgccatc
aacaaccatcaggtggtgatcattgctggtgagaccgggtccggtaaaaccactcagatt
ccgaagatttgcctgaacctggggcggggcacccgcgggcttattggtcatacccagccc
cggcggatagccgcgcgcagtgtttccagccggattgccgaagaactgggtgagacggta
ggccagcaggtcgggtaccaggtgcggtttaccgacaacacctcggaatcgtcccgggtc
aaggtaatgaccgacggcatcctgctggcagaagtgcagcatgaccgttttctggatcgc
tatgacacgctgattatcgatgaggcccacgagcgcagcctgaatattgattttctgctc
ggctatctcaagcaactgttgccgaagcgcccggatctgaaagtcatcatcacctcggcc
acgatcgaggtggagcgcttcagcgagtttttcaacgaagcgccggtgattgaagtcagc
ggtcgtacctttccggtagatattcgatatcgccccctggttggagacgaggacgacagg
gatcagggctggaccgacggtgttctctcggcattggacgagattgaacagcatgaacgg
caggaaaagcagcctccgggcgatgtactggtttttctgccaggcgagcgcgagatccgg
gccctgagcaaggtgctgcgccacgccgacctgcgtcataccgaagtgttgccgttgtat
tcccgcctgagcaaccaggaacagaaccgggtgtttcagggccacaagggacgacggatt
gtgttgtccaccaacgtggctgagacctcgctgaccgtgcccggtattcgctacgtgatt
gatactggcgttgcgcgcatcagccggtacagtgtgcgctcgaaaatacagcggctgcca
attgaaccgatttcccaggccagtgccaatcagcgggcaggtcggtgtggccgtgtggcg
ccgggtatctgtttccgtctgtacgacgaaacggactttttgaaccgcccggaatacacc
gatcccgaaatcctgagaaccaacctggcctccgttatcctgcaaatggcgacatccgga
ctgggtgagatccggcattttccgtttcttgaggcgccggatcgtcgtcaggtcaacgat
ggttacaagctgctggaagagcttagcgccgtcgatgacaaacggcgtgtcaccaggctt
gggcgcaccatggcccgattgccgctggatccccggttagcccggatgctggtgacctca
gcagagcagggcagtctggcggaagtgttgattgtgattgccggcctgagcgttcaggac
cccagggaacgcccacaggacaagcagcaggcggccgaccaggctcacgcaccgttcaac
gacaaggaatcggatttcgccaccctgctgaatatctggaactggttcgaagagcagcgc
caggaattgtcccagaaccagctcaagaaactgtgccagaaaactttcctgagctggatg
cgaatgcgtgagtggcgggacattcaccgccagctcaccctgatctgccgggaacagaag
ctgacattgaataaccagccggccaactacgacgcagtgcataaagccattctggccggc
ttgcttggccaggtggcggtgaaagtggaaaagcgggagtatctggccacccgaaaccgc
aaggtaatgattttcccgggttccaaagttggcaagacggcacccaagtggattgtggcg
gccgagatcgtcgaaaccagcaaggtgtttgcccgaatggtggcggccattcagcccgaa
tgggtggagccgctggcaggccacgtggtaaagcaccactattttgaaccccactgggag
cagaagcgtgcccaggtgatggggtacgagaaggtcacactttatggcctggatgtggtc
cccaagcgccgtattccctacgccaaggtagaccccgccgagtgccggaatctgtttatt
cgccgtgccctggttgagggggatttccagtccagggcgccgttcattgcccgtaaccgc
gaaatgctggatacggtcgagaatctggagaagaagacccggcggcgggatcttttggtg
gatgatgaagttttggtggctttctacgaccagagactgccatcggatatcgttagtggc
cgacattttgaatcctggtggaaaggattatctgccgaagaattgaagaagctggagctg
acagaggccgacgtactgcaaaggcctctggatgagacctcggcccagcagtaccccgac
tacctggaatgggagggggtgaaataccctctgagttatgaatttgaacccaccagtgag
cgcgacggtgtcaccctcaacgtgcccttgatggctttgcgacagatccccgcccggcgt
ctggagtggctggtgccggggctgcttcgggaaaaatgcattgccctggtcaaggggctg
ccgaaagcgttgcgccggaattttgtgccggtaccggactttgtcgacgcggctctggcc
aacctgcagccaggcaacgagcctctggcgatcaaactgggtgaacagctgcgacgaatg
accggggtccagattgatccggatgcctggccggaggaggagctgccccgccacctgagg
atgaacctgagggtgaccggcgataaaggcaaggtcatcgccgaaagccgagacaccgat
gagctccaggccagactggagggccgggccgaagaagcgctggcctcggcgacgagagat
gaacccgggaaaaaacaggcgggtgaatacaccgactggcaattcggcaacttcccggag
caggttcaaacagaaaaaggcggtatgcaggtcacggtgtacccggctctggaagatctg
ggtaataaggtgcgggcttctcgttgtctggacaagctcaccgcagaggatgcccatcgt
cgcggcgttgcgcggctgattgtgaaccggttcggcaataccctggcggatcttgaacga
aagctgcctcggttcaagcagtctgcgttgatgtttgcaccgatcggccaggcaaaggga
ctgctggatgatctggtgttgtcgacggttatgcagcattttctggcggaccaactgccc
agaaccgaacaggcgttcgcagagctgttcgacctccaccggggtgacttcattcctgct
ctggaagctgctgatgagcgcctgtttcaggccatgaacggctaccagaaagtcgcgaaa
cagctcaagggcaagattaatctggcgctggcagcaagcatggccgacctcaagttccag
ttgcaacatctggtatatccgggtttcctggtcaataccccggctcagtggctggaacgg
ttcggcacctactttgaagcagcggacatccggttggaaaaaatggcgcgggaaatgggg
cgtgagcgggaatttcttcacaccattgagccattatgggcgcggtatgccgcgaaactg
gagcaacagaagcgccagggcgtgcgagacccggagctggaaacctaccgctggatgatg
gaggagttccgggtgtcgttttttgcccaacaactgggcacggtaatgacggtttcggcg
aagcggttggataaacaatgggaaaagacccgtatataa
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