Marinobacter sp. RI1: MspRI1_26550
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Entry
MspRI1_26550 CDS
T10737
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mrx Marinobacter sp. RI1
Pathway
mrx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MspRI1_26550 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrx03019
]
MspRI1_26550 (rne)
03009 Ribosome biogenesis [BR:
mrx03009
]
MspRI1_26550 (rne)
Enzymes [BR:
mrx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MspRI1_26550 (rne)
Messenger RNA biogenesis [BR:
mrx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MspRI1_26550 (rne)
Ribosome biogenesis [BR:
mrx03009
]
Prokaryotic type
rRNA processing factors
MspRI1_26550 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BFN14644
LinkDB
All DBs
Position
2946912..2950082
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKEAMNGVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYED
VLSFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGQDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALELDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTAEVRAMVPVSVATFLLNEKRKQLADIEARQGVAVVVAPVPNMET
PHFEILRLRQDETSPEHVSSHQVAQQYSEREEEAAVEVASAEKPVREQAAVKAIRPSAPA
PAPTAAAPTAAAEQEEGLFRKLGKKIACFFRGEEPEQEASRDTNRNRSEERRNQARQDRR
KSRVARDDQRSGGNRSGNDRRQGSQQNRGDDNRGRNRGGRGDDQNRGERGGQNRSNRDDR
SGDSKGNDNRRDNRKDSQGRGQNRNRPQRDQKGPQDNREQQESQKGPSNDKQGGDDKQRK
PRRQRNRDGSPAETPASTPAARKAERSEKHQKDTQPEKAADKTAAVDAKASEPHVDKAEQ
ATATTPEAKAEPESRKPEQQEMAEKPETKTEQAEQKEAPSAEDKPEAKDESSRKEKSDGR
RGRSSGRQRKPRSADSAEKSGAAEDKGDKESLPAEAEQKQAAKPQRTEQVTATEAEQPAE
KASAEPAKAEDKEPVKAEAKAPRQAKADSPKASEPETGAASDQKAAEDKADKAPEQKAET
AKTEPEVDTAPEKQAGSSSEKPADKPEQPAEPVKAEPAPASEKPAEQKEETQEASASEAI
PVTPGRAYNDPREVRKRQRAAEEAKKAEEAKQAGSN
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcatcccgaagagttgcgcgtcgcgctggttgac
ggccaacggctgttcgaccttgatatcgaatccagtacccgcgaacagaaaaaggccaac
atctacaagggccgcattacccgggtagaacccagccttgaagcggctttcgttgacttt
ggcgcagagcgccacggcttcctgcccctgaaggaaatctccaaagagtatttcaagaaa
tcgcccgggcagattgagggcaaaatcaacatcaaggatgttgtctctgaaggtcaggaa
gtgatcgttcaggtcgacaaggaagagcgtggcaacaagggcgccgccctgaccaccttc
atctccctggctggacgttatctggtgctgatgccgaataatccccgtgcaggcggtatc
tcacgccggattgaaggcgatgaccgagcccagttgaaagaggccatgaacggtgtccag
gtgccgaagtccatgggcattattgtgcgtacggccggtattggccgcaccaccgaagag
ctccagtgggacctcgactacctggtacagttctgggaagccattacccaggcggctggc
gagcgcaaagcgcctttcctgatccaccaggaaagcaatgtcatcatccgcgccgtgcgc
gattacctccgccaggatatcggcgaagtcctgatcgatgccgataacgtttacgaagac
gtgttgagcttcgttcgggcggtcatgcccaccttcgagaacaagatcaagctgtacaag
gacgaaatccctctgttcagtcgttaccagatcgaaggccagatcgaaacggcgttccag
cgcgaagtgaaactgccctccggcggctcgattgtcatcgacccgaccgaagccctggtg
tccattgacatcaactcatcccgggccaccaagggtcaggatattgaagaaacggccctg
cagaccaaccttgaagcggccgaagaaatcgcgcggcaactacgcctgcgggatatgggc
ggcctgatcgttatcgacttcatcgacatgacgccagccaaacaccagcgggaagtcgag
cagaagatgcgtgaagcgctggaactcgacagggcccgcgttcaggttggcaagatctcg
cgtttcggcctgctggaaatgtcacgccagcgtctgcgtccctcactgggcgagacccgc
agcgaggtttgcccacgctgtgaaggccagggcaccatccggggtatcgaatctctggcg
ctgagcatcatgcgcctgatctacgaagaatcctccaaggagaagaccgcagaagtacga
gccatggtgccggtttctgtggccaccttcctgctgaacgaaaaacgcaagcagctggcc
gacattgaagcccgtcaaggcgtagcggttgtggtcgcacctgtgcccaacatggaaacg
ccgcacttcgagattctgcgcctgcgtcaggacgaaacctctccagagcatgtctccagc
catcaggtagctcaacagtacagcgagcgcgaggaagaggcagccgtagaagttgcaagt
gccgagaaaccggtgcgcgaacaggccgccgtgaaagctatccgcccctctgcgccagcc
ccagcaccgacagccgctgcaccaacggctgctgctgagcaggaagaaggcctgttccgc
aaactgggcaagaagatcgcgtgcttcttccggggcgaagaaccggagcaggaagccagc
cgcgacaccaaccgcaaccggagtgaagagcgtcgcaaccaggcccgccaggatcgccgc
aaatcccgcgttgcccgcgatgaccaacgctccggcggcaaccgcagcggcaacgatcgc
cgccagggtagccagcagaaccgtggcgacgacaaccggggccgcaatcgtggtggccgt
ggtgacgatcagaatcgtggtgaacgcggtggccagaaccgttccaaccgggacgaccgc
tctggcgacagcaagggcaatgacaaccgccgggacaaccgcaaggactcacagggtcgc
ggccagaaccggaaccgtccccagcgtgaccagaaaggcccgcaggacaaccgggaacag
caggagtcccagaagggaccttccaacgacaagcagggcggtgacgacaagcaacgcaaa
ccacgccggcaacgtaaccgggacggctcccccgccgagactccggcatctacgccagca
gcacgcaaagcggaacgcagcgagaagcaccagaaagatacccagccggaaaaagcggct
gacaagactgctgctgtggacgctaaagccagtgagccgcacgtagataaagccgagcaa
gcgaccgcaacaacgcctgaagccaaggctgagccagagagccgcaagcctgaacaacag
gaaatggccgagaagccggagaccaaaaccgaacaggccgagcaaaaagaggctccgtca
gcagaagacaagcctgaagcaaaggatgaaagcagccgcaaagagaagtctgacggccgc
agaggccgcagctccggccgccagcgcaagcctcgctctgcggatagcgctgaaaaatcc
ggtgctgccgaagacaagggtgacaaggagagcttgccggcagaagccgagcagaaacag
gccgccaagcctcagcgtaccgagcaggtcaccgcaacagaagccgagcaacctgcagaa
aaggccagcgccgagcctgccaaagccgaagacaaagaaccggtcaaggcagaggccaag
gcaccccggcaagccaaggctgactcaccgaaggcgtctgagccggaaaccggcgcggct
tctgatcagaaggctgccgaggataaagccgacaaggcgccggaacagaaagccgagacc
gctaaaaccgagcctgaagtagatacggcgccggagaagcaggccggatccagcagcgaa
aaacccgctgacaaaccggagcagcctgcagagcccgtaaaagccgagccagctccggcc
agcgaaaagccagcggagcagaaagaagagactcaggaagccagtgcatcggaagctatc
ccggtgactccgggccgggcctataatgacccaagagaggtccgcaagcgccaacgcgcg
gccgaagaagccaaaaaggcagaagaggccaagcaggccgggagcaactga
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