Marinobacter sp. RI1: MspRI1_30730
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Entry
MspRI1_30730 CDS
T10737
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mrx Marinobacter sp. RI1
Brite
KEGG Orthology (KO) [BR:
mrx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mrx03009
]
MspRI1_30730 (rlmD)
Enzymes [BR:
mrx01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MspRI1_30730 (rlmD)
Ribosome biogenesis [BR:
mrx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MspRI1_30730 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
TRAM
Methyltransf_11
MTS
Methyltrans_SAM
Cons_hypoth95
RrnaAD
Methyltransf_15
Methyltr_RsmB-F
Methyltransf_23
Ubie_methyltran
CMAS
PrmA
MetW
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
BFN15062
LinkDB
All DBs
Position
complement(3417044..3418393)
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AA seq
449 aa
AA seq
DB search
MSKRRRKVLPKEPVRCEIETLSHDGRGIARADGKTQFVDGALPGETVMAKMVSTRSRFDE
LRTTEVLEAAPDRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQW
VAPMRSPDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEP
LRELLHGMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPK
GPDTVHRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQ
PGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHG
DFTGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNG
YRLVQAGVMDMFPHTTHVESIALFERSAD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcgtcgccgcaaggttctgcccaaggagcccgtgcgttgtgaaatcgagacc
ctgagccacgatggccggggcattgcccgcgctgatggcaaaacccagtttgttgacgga
gccctgccgggcgaaaccgtgatggccaaaatggtcagcacccgcagccggtttgatgag
ctgcgcacaaccgaagtgctggaagcagcccctgaccgccagcagccaccctgtgagttt
gccgatctttgcggtggttgcagtcttcagcacatgagcgccgatgcccagatacggttc
aaggaaaataccctgcgcgagcattttgcccactttgggggcattgaaccggagcagtgg
gtggctccgatgcgttctccggatagcctcggctatcgtcgcaaggcgcggctgggcgta
cgttatgtgaaggcccgggagtcggtgctggttggtttccgggagaagcgcaatagcttt
ctgaccgatattgaccgctgcgtggtactggatccccggatcggtgagcgaatcgagcct
cttcgggagttgctacatggcatggcggcatttgaccggattgcccaggtagaagtggcc
tgtggcgatgatacggctgccatggtgttccggaacatggatgacctggtgccggacgac
cgggaaaagctgatcgcctttggtcaggcccatgacttgcatatctatctgcagcccaag
ggcccggacaccgtgcaccggatctggccggaatcgggcgggcgggacgatgaacgcctg
acctatcgtatggatgagtttgacctcaccatggccttccatcccatggactttacccag
gtgaacgccggcatcaaccgcaatatggtacaccgtgcggtcgagtggctggacgtccag
cccggagagcgggtactggatctgttctgcggcctgggcaactttacgctgccactggcc
cgcaagggcgggcaggttgtgggtgtggaaggcgacgatgccatggtggttcgcggccgt
gaaaacgcccgcctgaacgatctctccaatgtggaattccacggggcagatctgcacggg
gatttcaccgggcaatcctgggcaaaagagggttttgacaagattctgatcgatccaccc
cgttcgggcgcggaggagatctgtaagtatctgactgctttcggtgccaaccgcattgtt
tacgtgtcctgcaaccccgctaccctggcgcgggatgccggggtgatggtgcgcaacggt
tatcggctggtacaggccggtgtgatggatatgttcccccataccacccacgttgagtcc
attgcgttgtttgagcgtagcgcagactga
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