Marinobacter sp. RI1: MspRI1_32290
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Entry
MspRI1_32290 CDS
T10737
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mrx Marinobacter sp. RI1
Pathway
mrx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MspRI1_32290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrx03019
]
MspRI1_32290
03009 Ribosome biogenesis [BR:
mrx03009
]
MspRI1_32290
Enzymes [BR:
mrx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MspRI1_32290
Messenger RNA biogenesis [BR:
mrx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MspRI1_32290
Ribosome biogenesis [BR:
mrx03009
]
Prokaryotic type
rRNA helicases
MspRI1_32290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFN15218
LinkDB
All DBs
Position
3585792..3587318
Genome browser
AA seq
508 aa
AA seq
DB search
MSELSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFAL
PLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGL
KRGAQVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQ
RALFSATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEV
EPFDASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIAT
DVAARGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRTLER
ATNSPMEPYQLPSPAALQKMRVEQFEAQLLGFTDDPRAAKAIALLDEIAERNDMDMAAIA
GAMACLLEASQPDSLPLEQPEALPEISAAPRRDRKGPPPGKGGFRKGGPGKKFSKDGKPG
FRKSGPKGGKPAGKGGKPAGKGPKRAPR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaattgtcttttgccgaactggggctggatccagcagtactggaagccgtctcc
gccgttggctatgaaaccccgtcgcccatccaggcgcaatccatccctgctctgctggcc
ggcaaccacctgttgggcgtcgcccagacaggcaccggcaagaccgcagccttcgccctg
ccattgctgagccggattgatgctaacgtggccgagccacagattctggtgctggcccct
acccgggagctggcgattcaggtcgcggaagcgttcaccacctacgccagcaagttccgc
aattttcatgttctgccaatttacggtggccaggatttctcaccacagattcgcggcctc
aagcgtggcgcccaggttattgtgggcacacctggccgcatgctcgaccatctgcgcaag
ggcaccctgaagctagacggcctgaaggcactggtactggacgaagccgacgaaatgctg
cgcatgggctttattgatgacgtggaagccatcctggcgaagacgccggacacctgccag
cgcgcgctcttctcggccaccatgccgccacaaatcaagaaagtggcccagacttacctg
aaaaacgctaccgaagtaagaatcgagagcgaaacccgcacggttgaacgcatcgctcag
tttgtgctgccggtctacgccgagcgcaagctggatgcgctgacccgcattctggaagtg
gagccttttgacgcctcgatcattttcgtgcgcaccaaggccgaaaccaccatgctggca
gaaaaactgtccgcacgcggccacgctgtggcgcccctgagcggcgacctgaaccaacgc
caacgcgaacagaccgttgaagacctcaagcgtggcaagaaagacatcatcattgccacc
gacgtcgccgcccgtggtctggacgtgccccggattactcacgttatcaactacgacgtg
ccctacgacaccgaggcgtacatccaccgggttggccgtactggccgtgccggccgtacc
ggcaaggctatcctgctggtgactccgcgtgagcgcagctggctgcgcactctggagcgg
gccaccaactccccgatggaaccttaccagttgccgtcacctgccgccctgcagaaaatg
cgggtagagcagtttgaggcgcaactgctgggcttcaccgacgatcctcgcgctgccaag
gccatcgccctgctggatgagatcgccgagcgtaacgacatggacatggccgccatcgcc
ggcgccatggcctgcctgctggaagcttcccagccagactctctgccgctggaacagccg
gaagcactgccggagatttccgccgcgccccgccgggaccgtaaaggcccgccaccaggc
aaaggcggtttccgcaaaggcggccctggcaagaagttcagcaaggatggcaaacccggc
ttccgcaagagcgggccgaaaggtggcaagcccgccggcaagggcggcaaacctgcagga
aaaggccccaagcgcgcgccgcgctga
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