Marinobacter sp. RI1: MspRI1_34210
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Entry
MspRI1_34210 CDS
T10737
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mrx Marinobacter sp. RI1
Pathway
mrx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MspRI1_34210 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrx03021
]
MspRI1_34210 (rpoA)
03400 DNA repair and recombination proteins [BR:
mrx03400
]
MspRI1_34210 (rpoA)
Enzymes [BR:
mrx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MspRI1_34210 (rpoA)
Transcription machinery [BR:
mrx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MspRI1_34210 (rpoA)
DNA repair and recombination proteins [BR:
mrx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MspRI1_34210 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF22
Motif
Other DBs
NCBI-ProteinID:
BFN15410
LinkDB
All DBs
Position
complement(3807254..3808258)
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AA seq
334 aa
AA seq
DB search
MQRSVHELLTPRTIDVKESSATRAKVTLEPLERGFGHTLGSALRRILLSSMPGCAVTEAQ
IDGVLHEYSAIEGVQEDVIEILLNLKGVAVKMNGRDDAELTLSKKGPGVVTAGDIKLDHD
VEIANPEHVICHLSENGEVNMRLRVARGRGYEPADQRGLDEDETRAIGRLQLDATFSPVR
RVAYAVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLAVFVDFDHEKEPE
RVEEEEEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLRGDDRVLGG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttcagtacatgagttattgacacctcgtaccattgacgtgaaagaatccagc
gccacgcgcgccaaggtgactctggagccgctcgagcgcggtttcgggcacaccctgggc
agcgcgctgcgtcgtattcttctgtcttcgatgccgggctgcgccgtaactgaagcacag
atcgacggtgtcctgcacgagtacagtgccattgaaggtgtccaggaagacgtcatcgag
attctgctgaatctcaagggcgttgccgtaaagatgaacggccgtgacgatgctgagctt
accctcagcaagaaaggtccgggcgtggtgactgccggcgatatcaagctggaccacgat
gtggaaatcgctaacccggagcacgtgatctgtcacttgagcgaaaacggcgaagtgaac
atgcgcttgcgcgtggcacggggccgtggctacgagccggctgatcagcgtggtctggac
gaggacgaaactcgtgccatcggacgcttgcagctggatgcaacgttcagcccggttcgt
cgtgtggcctatgccgtcgagagcgctcgggttgagcagcgtacagacctggacaagctg
gttattgatctggagaccaacggtaccatcgatccggaagaagcaattcgccgggccgct
accattctccagcagcagctggctgtgttcgtcgatttcgatcatgagaaagagcctgag
cgtgtagaggaagaggaagaaatcgatccgattctgctgcgcccggttgatgatctggag
ttgactgtgcgttcagctaactgcttgaaggctgaaaacatttactatatcggcgatctg
atccagcgcacggaagtggagctgctgaagacgcctaatcttggcaaaaagtcgctgacc
gagatcaaggacgttcttgcgtcccgtggtctgtctttgggtatgcgtcttgataactgg
ccgccggcaagccttcgtggtgatgaccgggttctgggcggttga
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