Marinobacterium rhizophilum: KDW95_02735
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Entry
KDW95_02735 CDS
T08609
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW95_02735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrz03019
]
KDW95_02735
03009 Ribosome biogenesis [BR:
mrz03009
]
KDW95_02735
Enzymes [BR:
mrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDW95_02735
Messenger RNA biogenesis [BR:
mrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDW95_02735
Ribosome biogenesis [BR:
mrz03009
]
Prokaryotic type
rRNA helicases
KDW95_02735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
adh_short
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UTW12619
LinkDB
All DBs
Position
complement(623541..625337)
Genome browser
AA seq
598 aa
AA seq
DB search
MSDAGEQLSFTSLGLSEPVLKALTDVGYETPSPIQAASIPHLLAGKDLLGMAQTGTGKTA
AFALPLLSRLDTTRREPQMLVLAPTRELAIQVAEACQSYAKHMPDFHVLPIYGGQAYDTQ
LRQLKRGAQVIVGTPGRVMDHLRRGSLKLDSLSAMVLDEADEMLRMGFIDDVEWILEHTP
KTRQIALFSATMPSQIKRVAQKYLNDPEEVRIVSKTSTAPTITQKYLRVSGHHKMEALTR
ILEIESFEAMLIFVRTKSATEELASKLSARGHAAEALNGDISQQQRERIVERLKAGKIDI
LVGTDVVARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRETRMLY
AIEKATRQPLERIELPSVGVINEKRVERFMQRISDTLDSGEISTYLDLLSDYQKEHDTDP
MQIAAALAVLAQGETPLLLDEREIPQPREYNDQPRERRGPINVNPTARPLKDHPEIEMQR
FVVMVGRSHGVMPKNIVGAIANEANMAANLIGQIDLFDDYSTVDLPAGMPAKVMQVLKKA
FVCGQRLNIHPAGETPDTDRGAPSRGARRPNGPGRGAPNKGRGKPRDGAAPNRRPPQK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgctggtgaacagctctcctttacctctctcggtctgtccgaaccggtgctc
aaggcactgaccgatgtcggttacgaaactccatctccgattcaagcggctagtattccg
cacctgctcgccggcaaggatttgcttggcatggcacagaccggtaccggtaaaaccgct
gccttcgctctgccactactgtcccgattggacactacccgtcgcgagccccagatgctg
gtgctggcaccgacacgcgaactggccatccaggtcgcagaggcctgccagtcgtacgcc
aagcacatgccggacttccacgtcctgccgatctacggcggccaggcttacgacacccag
ctgcgccagctcaagcgcggcgcccaggtcattgtcggcaccccgggccgcgtgatggat
cacctgcgtcgcggctctctgaaactcgactccctcagcgccatggtgctggatgaggcc
gacgaaatgctgcgcatgggctttatcgacgatgtcgaatggatccttgagcacacgccc
aagacgcgccagattgccctgttctcggccaccatgccgtcacagatcaagcgcgtggca
cagaaatacctgaacgatcccgaagaagtccggattgtcagcaagacctcgaccgcaccg
accatcacgcagaaatacctgcgcgtcagcggccaccacaagatggaagccctgacccgc
atcctcgaaatcgaatctttcgaggccatgctgatcttcgtgcgcaccaagtctgccacc
gaagaactggccagcaagctgtccgcgcgcggccatgccgccgaagccctcaacggtgac
atctcgcagcagcagcgcgagcgcatcgtcgagcgcctgaaagccggcaagatcgatatc
ctggtcggcaccgacgttgtggcccgcggtctggacgttgaacgcatcagccacgtgctg
aactacgacatcccctacgataccgaatcctatgtccaccgcatcggccgtaccggccgc
gccggacgcaagggcgaggccatcctgttcgtggcaccgcgtgaaacccgcatgctttac
gccattgaaaaagctacccgccagccgctcgagcgcatcgaactgccaagcgtgggcgtg
atcaatgaaaagcgcgttgaacgcttcatgcagcgcatcagcgacaccctggacagcggc
gagatctccacctacctggacctgctctccgactaccagaaagaacacgacaccgatccg
atgcagatcgctgccgccctggccgtgctggcccagggcgaaacgccgctgctgctggac
gagcgtgaaattccgcagccgcgcgaatacaacgaccagccacgcgaacgccgcggaccg
atcaatgtgaaccccacagcccgcccgctgaaggatcacccggaaatcgaaatgcagcgc
ttcgtcgtcatggtaggccgcagccacggcgtcatgccgaaaaacatcgtcggcgccatc
gccaacgaagccaacatggcggccaacctgatcggccagatcgacctgttcgatgactac
agcaccgttgaccttccggccggcatgcccgccaaggtcatgcaggtgctgaagaaggcc
ttcgtttgcggtcagcgcctgaacattcacccggcaggcgaaacgccggatacggatcgc
ggcgccccctcgcgcggcgcccgtcgtccgaacggccctggtcgcggcgcccccaacaag
ggtcgcggcaagccgcgtgacggcgcagcaccgaaccgtcgcccgccgcagaagtaa
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