Marinobacterium rhizophilum: KDW95_07845
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Entry
KDW95_07845 CDS
T08609
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDW95_07845 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrz03019
]
KDW95_07845 (rne)
03009 Ribosome biogenesis [BR:
mrz03009
]
KDW95_07845 (rne)
Enzymes [BR:
mrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KDW95_07845 (rne)
Messenger RNA biogenesis [BR:
mrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDW95_07845 (rne)
Ribosome biogenesis [BR:
mrz03009
]
Prokaryotic type
rRNA processing factors
KDW95_07845 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTW13545
LinkDB
All DBs
Position
1756444..1759851
Genome browser
AA seq
1135 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESSNREQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPMKEISRDYFSKQPEKGGRPNIKDVLKEGTEVIVQVEKEERGNKGAALTTFI
SLAGRYLVLMPNNPRAGGISRRIEGDERSQLKEALAGVDVPDKMGIIIRTAGVGRSSEEL
QWDLNYLATLWEAITEAGTKRNAPFLVYQESNVVIRAIRDYLRNDIGEVLIDSDKVFEEA
RQFIRHVMPSFENKIKLYKEQTPLFNRYQIESQIETAFEREVTLPSGGSIVIDPTEALVS
IDINSARATRGGDIEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTPIKNQRAVED
RLADALKLDRARVQMGRISRFGLLEMSRQRLRPSLAESRGTVCPRCNGQGSIRDTESLAL
SILRLIEEESSKDRTSQIRAILPVTAATYLLNEKRHEVHEIELRHRVRIVIVPNPNMETP
HYEVVRLRDDHTVATTNDASYNLQPPPKQEEFTATAAKAVKREEAAVQGIAPASPAPAAA
PEPAPAPAPAAAPAPAPARTERAPATAKKAEAAAPVSLGSKLAGFFKGLFGDTAKPEPEP
TPLPEIRQGRAPSQNREEQRSRPTQERSSSKPKRRRDSRDNDRRRRSQQDSDEIITITPQ
QADSAPAPSADEQGSSGKPRRRRRSRKNDSDESRTDRSARNADANADSNEEPRTAPAADV
GKDTPDSSPRDADDNAKAKPAAEKREARDSSDDSETRGRRRGRRRRGSDRVAERTSTDAD
ATTVAAAAQTASPQDSAKPVEAQASAEVTAKDTSTKPVAASDAQTATQGADAVVETQAAA
STETPVSGESAETLAETAPQDKADVATATDAVAQASAQTEVTPVPATEVASAEATTTEAD
ATPAEAETKAEAEAEAEAETTVQKDAAEPVAAQTVETVETAEAKAQAEPQPDTTDAVASE
PEVTEPKAAAADVAGVATAPADDTQAEPASAESDARADSSDRVAATASAEPVTEPDAQAA
PSDAVADAAQASEAAAEADALPAEAAEAAAEPQAEAEAEAEAEAEAAKAAADAVAVATGA
AQAQAEEKAPEAAPEVAQQPAPRRRRRSGRAPNDPREKRRSQQKAQDAKAENQHS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagccagaagagttgcgggtcgccctcgttgac
gggcagcggctgtacgatctggatatcgagtcatccaaccgcgaacagaaaaaggccaac
atctacaagggcaagatcacccgcgtggagccgagcctggaagcggcctttgtcgactac
ggcgccgaccgtcacggcttcctgccgatgaaggaaatttcccgcgactacttcagcaag
cagcccgaaaagggcggccgtccgaacatcaaggatgtgctgaaggaaggtaccgaagtc
attgttcaggttgaaaaggaagagcgtggcaacaagggcgcggccctgaccacctttatc
agcctggccggtcgctacctggtgctgatgcccaacaacccccgtgccggcggtatttcc
cgccgcatcgaaggggacgagcgcagccagctgaaagaagccctggccggcgtcgatgtg
cctgacaagatgggcatcatcatccgcaccgcaggtgtgggccgcagctcggaagaactg
cagtgggacctgaactacctggccaccctgtgggaagccatcaccgaagccggcaccaaa
cgcaacgcccccttcctggtctaccaggaaagcaacgtcgttatccgtgcgatccgtgac
tacctgcgcaacgacatcggcgaagtcctgatcgacagcgacaaggtgttcgaggaagcc
cgccagttcatccgtcacgtgatgccaagcttcgagaacaagatcaagctctacaaggaa
cagacgccgctgttcaaccgctaccagatcgaatcccagatcgagacggccttcgagcgc
gaagtcaccctgccctccggcggctcgatcgtgatcgaccccaccgaggctctggtatcc
atcgacatcaactcggcccgcgccacccgcggcggcgatatcgaagaaaccgcgctcaac
accaacctggaagcggcggaagaaatcgcccgccagctgcgcctgcgcgatatcggtggc
ctggtggtgatcgacttcatcgacatgaccccgatcaagaaccagcgtgccgtcgaagac
cgcctggccgacgccctgaagctggaccgtgcccgcgtacagatgggacgcatctcccgt
ttcggcctgctggaaatgtcccgccagcgcctgcgtccatcactggccgaatcccgcggc
accgtgtgcccgcgctgcaacggtcagggttccattcgcgataccgaatccctggccctg
tcgatcctgcgcctgatcgaggaagagtcctccaaggaccgcacctcccagatccgcgcc
attctgccggtcacggcggcgacctacctgctgaacgaaaagcgtcacgaagttcacgaa
atcgaactgcgtcaccgcgtgcgcatcgtcatcgtgccgaatccaaacatggaaacgccg
cactacgaagtcgtgcgcctgcgtgatgaccacaccgtggccaccaccaacgacgccagc
tacaacctgcagccgcctcccaagcaggaagagtttaccgccactgccgccaaggccgtg
aagcgcgaagaggccgccgtacagggtatagccccggcatcaccggcaccggccgccgcg
ccagagcccgcaccggcacctgcgcccgccgctgcacctgcacctgcgcctgctcgcacc
gaacgtgcaccggcgacggccaaaaaggctgaagccgccgcgcccgtatcgctgggcagc
aagctggccgggttcttcaagggattgtttggcgacacggccaaaccggaacccgaaccg
acgccgctgcccgagattcgtcagggccgtgcacccagtcagaaccgtgaagagcaacgc
agccgcccgacgcaggaacgcagcagcagcaaacccaagcgccgtcgtgacagccgcgac
aatgaccgtcgtcgccgctcgcagcaggactccgacgagatcatcaccattacgccgcag
caggccgacagtgctccggcacccagcgctgacgaacagggcagctccggcaagccgcgt
cgccgtcgtcgcagccgcaagaacgacagtgacgagtcccgcactgatcgctctgcccgc
aacgccgatgccaatgcagacagcaatgaagagccgcgcaccgcgccggcagcagacgtc
ggcaaggatacgccggacagcagcccgcgtgacgcggatgacaacgccaaggccaagcct
gcggcggaaaaacgcgaagcgcgggacagcagcgatgacagcgaaacccgcggtcgtcgt
cgtggccgtcgccgtcgcggttctgaccgggttgctgaacgcacctcgacagacgccgat
gccaccacggttgccgctgcggctcagactgcgagcccgcaggacagtgcaaaaccggtt
gaagcgcaggccagcgctgaggtgacagccaaggacacaagcaccaagccggtggctgcg
tccgatgcgcaaacagccacacaaggcgccgacgccgtcgtcgaaacccaagctgcggct
tcgaccgagactccagtctcaggtgaatccgccgagaccctggcagagacggcaccccag
gacaaggccgatgttgcgacagcaacggatgccgtcgcccaagcgtcagcccagaccgaa
gtgacgccagtaccggccaccgaggtcgcgtctgcagaagctactacgacagaagccgat
gccacaccggcagaagcagaaacaaaagcggaagcggaagcggaagcggaagcggaaacg
acggtacagaaagacgccgccgagcccgttgcagcacaaaccgttgagacagttgagacc
gccgaggctaaagcccaggcagaacctcagcccgataccactgacgctgtggcaagcgag
cccgaggttacagaacccaaggcagcagcagccgacgtggcaggcgttgcaacggcaccc
gctgatgacacccaggctgagcccgcaagcgccgagtccgacgccagggcagacagcagc
gatcgggtagccgctacggcatccgctgagcctgtgaccgagccggacgcccaggccgcg
cccagcgacgcagtggccgatgcagcccaggcaagcgaggctgcggcagaagccgatgcc
ctgcctgccgaagccgccgaagccgccgcggagccgcaagccgaagccgaagccgaagcc
gaagccgaagccgaagccgccaaggctgcagcagatgccgtcgctgttgcaacaggcgcc
gcacaggcacaggctgaggagaaggcacctgaagccgcgcccgaagtggcacagcaaccg
gcgccacgccgtcgccgtcgctccggccgtgctcccaacgatcctcgggagaagcgtcgc
agccagcagaaggcgcaggacgcgaaagcggaaaaccagcactcttaa
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