Marinobacterium rhizophilum: KDW95_08435
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Entry
KDW95_08435 CDS
T08609
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDW95_08435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrz03400
]
KDW95_08435 (mfd)
Enzymes [BR:
mrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDW95_08435 (mfd)
DNA repair and recombination proteins [BR:
mrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDW95_08435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
SWI2_SNF2
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UTW13651
LinkDB
All DBs
Position
1888065..1891499
Genome browser
AA seq
1144 aa
AA seq
DB search
MIKLDHPMPAGAGDIKRIGQLKGSAQGYLAAAAARRHQDVTLVVASSSDAAARLAGEIAF
FDPDVELLSFPDWETLPYDNFSPHQDIISERILSLYRLPQLSRGILIVTAATLMQRIAPR
KFIGGNSLLLDTGQRLDPSETRQMLSDAGYRAVETVYEHGEFAQRGAILDIYPMGSRLPY
RIDLFDDEIDTLRVFDPETQRSIEQVEQVRLLPAQEFPFDSSAITAFRQRWRERFDVDPG
RCPTYQDVSNGVTPPGIEYYLPLFFDSSMTLFDYLPDNTLVICDPGLEGAADHFWHEAQS
RYEERRHDVERPLLAPEEVFTRVDELFAALKRFPRLVMHSDSAGKNAGAQDSAFDEPPAL
PVNAQSNHPMAALSDFLQSHPEPILFCAESAGRRESLLELFAAANIKTRSVDNWQAFAEQ
QPRHGICVYPLELGLSLPGQCQLITETQLFGQQVFQRRRRSRDKEQADQVIKNLSELRTG
APVVHLDHGVGRYLGLQCIELDGQQNEFLTLEYADNAKLYVPVSALHLISRYGGSSDEMA
PLHRLGTEQWSRAKRKAAEKVRDTAAELLDIYARRGAREGFSFGTPDAEYRQFSASFPFE
ETPDQALAIEAVVKDMTATQPMDRLVCGDVGFGKTEVAMRAAFLAVQNSKQVVILVPTTL
LAQQHYDNFRDRFADWPVNVELISRFRSASQQSQAQARLASGEIDIIVGTHKLLQGDIQF
KDLGLVIIDEEHRFGVQQKERLKSLRAQVDILTLTATPIPRTLNMAMSGMRDLSIIATAP
ARRLSVKTFVRESDKPMIKEAILRELLRGGQVYYLHNEVKTIEKTADEIRALVPEARIGI
GHGQLRERELEKVMTDFYHKRNNVLVCTTIIETGIDIPNANTIIIDRADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPVANMTTDAGKRLEAIAQASDLGAGFTLATHDLEIRGAGELLG
EDQSGQMQSVGFTLYMEMLEQAIQSLRDGKTPNPDAPLQHGPEINLRLQALIPDDYLPDV
HNRLILYKRISNASNDAQLHELQVEMIDRFGLLPEPVKSLFRITALKLRASALGIAKVDA
GDKGGRIEFNADTTIDPYKLVSLVQSQPRRFKLEGASQLRFIVEMTTPELRAQTVEHLLS
ELSA
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaactggaccacccgatgcccgcaggagcaggcgacatcaagcgtatcggccag
ttaaaaggcagcgctcagggctacctggctgccgccgcagcccgtcgccaccaggacgtg
acgctggtcgttgccagcagcagcgatgccgcagcgcgcctggccggcgaaatcgccttt
tttgatcccgatgttgaactgctgtcctttcccgactgggaaaccttgccctacgacaat
ttttcaccgcatcaggacatcatctccgagcgcattctcagcctgtaccggctgccgcag
ctgagtcgcggcatcctgatcgtcacggcagccaccctgatgcagcgcattgcaccgcgc
aagtttatcggcggcaacagcctgctgctggataccggacagcggctggaccccagcgaa
acacgccagatgctcagcgatgccggctaccgcgccgtcgaaaccgtttacgagcatggc
gagttcgcccagcgcggcgccatccttgatatctaccccatgggcagccgcctgccgtac
cgcatcgacctgttcgatgatgaaatcgataccctgcgggtattcgaccccgaaacccag
cgctccatcgaacaggtcgagcaggttcgcctgctgccggcccaggagttccccttcgac
tccagcgccattacggcatttcgccagcgctggcgcgaacgctttgatgtggatcccggc
cgctgcccaacctaccaggacgtcagcaacggcgtgacgccgcccggtatcgagtactac
ctgccgctgtttttcgacagcagcatgaccctgttcgactacctgccggacaacaccctg
gtgatctgcgacccgggcctggaaggcgccgccgatcatttctggcacgaagcccagtcg
cgctacgaagaacgccgccacgatgtagagcgcccgctgctggctcccgaagaggttttc
acccgggtcgatgagctcttcgccgccctcaagcgcttcccccgcctggtgatgcacagc
gacagcgcaggcaagaacgcaggcgcccaggacagcgccttcgacgaaccgcctgccctg
ccggtgaatgcccagtccaatcaccccatggccgcgctgagcgacttcctgcagagccac
cccgaaccgattttattctgtgccgagtccgccgggcgacgggaatccctgctcgaactc
ttcgccgcggccaacatcaagacacgcagcgtggataactggcaggcttttgccgagcag
caaccgcgtcacggcatctgcgtttacccgctggagctgggtctcagcctgccgggccag
tgccagctgatcaccgaaacccagctgtttgggcaacaggttttccagcgccggcggcgc
agccgcgacaaggagcaggccgaccaggtcatcaagaacctgtcggaactgcgcacgggc
gctccggtagtacatctggatcacggggtgggccgttacctggggctgcagtgcattgaa
ctggatggccagcagaacgagtttctgacgctggaatacgccgacaatgccaaactctac
gtgcccgtcagtgcgctgcacctgatcagccgctacggcggcagcagcgacgagatggca
ccgctgcaccgcctgggcaccgagcagtggagccgcgccaagcgcaaggcggcggaaaag
gtgcgcgataccgccgccgaactgctggatatctacgcccgccgtggcgcccgtgaaggc
ttcagtttcggcacgccggatgcggaataccgccagttcagcgccagcttcccgttcgag
gaaaccccggaccaggctctggccatcgaggccgtcgtcaaggacatgaccgccacccag
ccgatggatcgcctggtgtgcggcgacgtgggctttggcaagaccgaagtcgccatgcgg
gccgcctttctggcggtacagaacagcaagcaggtggttattctggtccccaccaccctg
ctggcacagcagcactacgacaacttccgagaccgttttgccgactggccggtcaatgtc
gagctgatttcacgttttcgcagcgccagccagcaaagccaggcacaggccaggctcgcc
tcgggcgaaatcgacatcattgtcggcacccacaagctgctgcagggtgatatccagttc
aaggatctcggcctggtcattatcgacgaggagcaccgctttggcgtacagcaaaaggag
cgcctcaagtccctgcgcgcccaggtggatattctgaccctcaccgccacgccgatacca
cgcaccctgaacatggcgatgtccggcatgcgtgacctgtcgatcatcgccacggcgccg
gcgcgacgactgtcggtaaagacctttgtacgtgaaagcgacaaacccatgatcaaggag
gccatcctgcgcgagctgctgcgcggcggccaggtctactacctgcacaacgaagtcaaa
accatcgagaaaaccgccgacgagatccgcgccctggtgccggaggcccgcatcggcatc
ggccatggccagctgcgcgagcgcgagctggagaaagtcatgaccgacttctaccacaag
cgcaacaatgtactggtgtgcaccaccatcattgaaaccggcatcgacatccccaacgcc
aacaccattatcatcgaccgggccgacaagttcggcctggcacaactgcatcagctgcgt
ggccgcgtcggacgctcccaccaccaggcctacgcctacctgctaacgccgccggtcgcc
aacatgaccaccgatgccggcaagcgcctggaagccatcgcccaggccagcgacctgggc
gccggcttcaccctggccacccacgacctggaaatccgtggcgcaggcgagctgctgggc
gaagaccagagcggccagatgcagagtgtcggctttacgctctatatggaaatgctggag
caggcgatccagtccctgcgcgatggcaagacccccaaccccgatgcgccgctgcagcac
ggccccgagatcaacctgcgcctgcaggccctgattcccgacgactatctgccagacgtg
cacaaccggctgatcctgtacaagcgcatctccaatgccagcaacgacgcccagctgcat
gaactgcaggtggaaatgattgaccgcttcggcctgctgccagagcccgtcaagagcctg
ttccgcatcaccgcactcaaactgcgcgccagcgcactgggcattgccaaggtggacgct
ggcgacaagggcgggcgtatcgaattcaatgccgatacgaccatagatccgtataaactc
gtcagcctggttcagagccagccacggcgcttcaagctagaaggcgcaagccagctgcgc
ttcatagttgaaatgacaacacccgaactgcgcgcccagaccgtcgaacacctgcttagc
gagctttctgcatga
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