Marinobacterium rhizophilum: KDW95_09310
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Entry
KDW95_09310 CDS
T08609
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mrz
Marinobacterium rhizophilum
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrz03019
]
KDW95_09310 (hrpA)
Enzymes [BR:
mrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KDW95_09310 (hrpA)
Messenger RNA biogenesis [BR:
mrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KDW95_09310 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
AAA_25
nSTAND3
NACHT
SLFN-g3_helicase
ResIII
ABC_tran
nSTAND_NTPase5
PhoH
TsaE
AAA_30
AAA_23
NTPase_1
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
UTW13811
UniProt:
A0ABY5HPK6
LinkDB
All DBs
Position
complement(2069191..2073108)
Genome browser
AA seq
1305 aa
AA seq
DB search
MTIDIEHLRQQLALCQCKDRSELLRKFQQLEQRLRKGLPADRLAAQLVPALERSAAQVAA
RAARVGTVNYPDLPVSARREEIGKAIMENQVVVIAGETGSGKTTQLPKICLELGLGVRGL
IGHTQPRRLAARTVATRIAEELNCTLGDQVGYQVRFTEQVSDHTLVKLMTDGILLAETQH
DRLLQRYDVIIIDEAHERSLNIDFLLGYLKRILPQRPDLKVIITSATIDLERFSRHFDNA
PIIEVSGRTYPVEVLYRPLNDRGEDQPDVDQQQAILEAVEEITDLARSRRSNSARDILIF
LSGEREIRETAEVLRRAQLRDTEVMPLYARLSVAEQNRVFQAQRGAGRRIVLATNVAETS
VTVPGIGYVIDPGQARISRYSYRAKVQRLPIEAVSQASANQRMGRCGRISEGVCIRLYSE
EDFEARPRFTDAEIRRTNLAAVILQMLSLRLGDIADFPFIDPPDSRFINDGFKLLEELGA
VDTARGMTPLGRQLAQLPVDPRIGRMVLEGARQNALREVLVVASALSSQDPRERPLDKQQ
AADEKHREYADDESDFLTMLNLWNLYEEQRQALSQNQLRKYCQKHFLSFLRMREWRDVHR
QLHLISRQLKLSENTKPAEYEPLHRSLLAGLLSQIGMRQENREYLGARNRRFHLFPASTL
FKKAPKWVMSAEMVETSRLFARMNAAIKPEWVEPLAGHLVKRSYLEPHWEKKRAQVVASE
QVTLFGLIIVPRRKVHYGPIDPEACHEIFIRSALVEGEYQTQAKYFSHNRQLLEGVEALE
AKSRRRDLLVDEDSLFDFYARRLAEHGGADIVNGAGFEHWRKGAEKQNPQLLFFTEADVL
QRSAAHVTARDYPPRMRLDTVDLQLNYQFEPGTDSDGVTLDLPLALLNTVTPRRPDWLVP
GMLEGKCIAILKGLPKQQRKHFVPIPDYVRAFTEQVVFADGDLYEALSLFLRRKTGTRVD
PAELRAVELDEHLRMNIRLLDAKGKQLGVGRDLETLSSQFGKQAEAALREGPGDSWGRSG
LLSWDFGDLPESVELRQAGGIRLAAYPGLRDCGSSVELHVCASPDQAQAESRLGIARLAM
LELAAPVRYARREMPHLNEALLYGGAQFDKARLTDAILMQALMQLMQLDESLPRTETEYR
IRLEQARADLWEKVVQLAQFVRDCHRDYHQVRKPLGGNIPLQAVTVLNDIKSQLSELIKT
EYLLTTPWAQLQHYPRYLQAIQKRLEKYQRDLNRERLLSDQLQQYWQRYKGLRDKNLTQG
VFDPALEEFRWMLEEYRVSLFAQGLGTQVAVSDKRLQQQWRQLQA
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtgactatcgatattgaacacctccgtcagcagcttgcgctgtgtcagtgcaaggatcgc
tccgagcttcttcgaaagtttcagcagctggagcagcgtctgcgcaagggcttgcctgca
gaccggctggcggcccagctggtgccggcgctggaacgctcggcggcccaggtagcagcc
cgggccgcccgtgtcggcaccgttaactacccagacctgcccgtatcggcccggcgcgag
gaaatcggcaaggcgatcatggaaaaccaggtggtggtgattgccggtgaaaccggctcg
ggcaagaccacccagttgccaaaaatctgcctggaactgggattgggggtgcgcgggctg
atcggccatacccagccccggcggctggcggcgcgcaccgtggcgacccgcattgctgag
gaactgaactgcaccctgggtgaccaggtcggttatcaggtgcgcttcaccgagcaggtg
tccgaccataccctggtcaagctgatgaccgacggtatcctgctggccgaaacacagcat
gaccgcctgctgcagcgctacgatgtcatcatcatcgatgaggcccatgagcgcagtctc
aatatcgatttcctgctcggctacctgaagcggatcttgccgcaacggccggaccttaag
gtcatcatcacgtcggcaacgatcgacctggaacgtttctcgcggcatttcgacaatgcc
ccgatcatcgaagtctcggggcgtacctatccggtggaggtactttaccggccgctgaat
gaccgcggcgaagaccagccggatgtggatcagcagcaggcgatcctggaggcggtggaa
gaaatcaccgatctggcccgcagccggcgcagtaacagtgcgcgggatatcctgatcttt
ctcagtggcgagcgggaaatccgtgaaaccgctgaggtgctgcgccgggcacagctgcgc
gataccgaagtgatgccgctctatgcgcgcctgagtgtggcggagcagaaccgggtcttc
caggcgcaacgcggtgccggccggcgtatcgtgctggccaccaacgtggcggaaacctcg
gtcacggtgccgggcatcggttatgtgatcgaccccggacaggcgcgaatctcccgttac
agctaccgggccaaggtacagcgtctgccgatcgaggcggtgtcccaggccagtgccaat
cagcgcatggggcgctgcgggcgtatttcggaaggtgtctgcattcggctttactctgaa
gaggacttcgaggcgcgtccgcgctttaccgacgcggagattcgccgcacgaatctcgcg
gcggtgatcctgcagatgctcagcctgcgcctgggtgatatcgccgactttccctttata
gacccgccggacagccgctttattaatgacggtttcaagctgctcgaagaactcggcgcg
gtggatactgcccgcggcatgacgccactcgggcggcagctggcgcaactgccggtggat
ccgcgcatcggccgcatggtgctggagggggccaggcagaacgccctgcgcgaggtgctg
gtggtggccagtgcgctgagcagccaggacccgcgcgaacgcccgctggacaagcagcag
gccgcggatgaaaagcaccgcgagtacgcggacgacgagtcggatttcctgaccatgctc
aacctgtggaacctgtatgaagagcagcgccaggcactgagtcagaaccagctgcgcaaa
tactgccagaagcacttcctgtcgttcctgcgcatgcgcgagtggcgcgatgtgcaccgc
cagcttcatcttatcagtcgacaattgaagttgagcgaaaataccaagcctgcggaatac
gagccgttgcacaggtccctgctcgccggcttgctgagccagatcggcatgcggcaggaa
aatcgggaatacctgggggcgcgtaaccgccgcttccacctgtttccggcgtccaccctg
ttcaagaaggcacccaaatgggtgatgtcggcggaaatggtcgaaacctcgcgcctgttt
gcccgcatgaatgcggcgatcaagcccgaatgggtcgagccgctggccgggcacctggtg
aagcgcagctatcttgagccgcattgggagaaaaaacgtgcccaggtggtcgccagtgag
caggttacgctgtttgggctgatcatcgtgccgcggcgcaaggtgcactacggccctatc
gatcccgaggcctgtcatgaaatattcattcgcagtgcgctggtggagggggagtaccag
acccaggcgaagtacttcagtcacaaccgccagttgctcgagggggtggaggcgctggaa
gccaaaagtcgccgtcgcgacctgctggtggatgaagacagcctgttcgatttttatgcc
cggcgcctggcggagcacggtggcgcggatatcgtcaatggcgcgggcttcgaacactgg
cgcaagggtgccgaaaagcagaatccccagctgctgttttttaccgaggcggatgtactg
cagcgctcggccgcccatgtcacggcgcgggactatccgccgcggatgcgactcgatacc
gtcgacctgcagctgaattaccagttcgaacccggtaccgacagcgatggcgtgacgctg
gacctgccgctggcactgttgaacacggtaacgccacgccggccggactggctcgtgcca
gggatgctggagggcaagtgcattgccattctgaagggcttgcccaagcagcagcgcaag
cactttgtgcccattcctgactatgtgcgtgccttcaccgagcaggtagtgtttgcggat
ggcgacctgtacgaggcgctgagcctgtttttgcgccgcaaaaccggcacgcgggtggat
cccgccgaactgcgggcggtggagctggatgagcatttgcgcatgaacatccgcttgctg
gacgccaaaggcaagcagctcggggtcgggcgggacctggaaaccctgtcgagccagttt
ggcaaacaggctgaggcggcattgcgtgaagggccgggggacagctgggggcgcagtggc
ttgctgagctgggacttcggcgatttgcccgagtccgtggagctgcgccaggccgggggt
atccggctggcggcttatccgggcctgcgcgactgtggcagcagcgttgagctgcatgtc
tgtgcatcccctgatcaggcacaggccgagtcgcgcctggggattgcacgcctggccatg
ctggagctggcggccccggtgcgttacgccaggcgtgaaatgccgcacctgaacgaggcc
ctgctgtacggcggtgcccagtttgacaaggcgcggctgacggatgccatcctgatgcag
gcgctgatgcaattgatgcagctggatgagtccttgccacgcacggaaacggaatatcga
atccggctggagcaggcgcgggcagacctgtgggaaaaggttgttcagctcgcccagttt
gtgcgcgactgccaccgcgattatcaccaggtacgcaagccactgggtggaaacatcccg
ttgcaggcggtgacagtgctaaatgatataaaaagccagctgtcggaacttattaaaact
gaatatctgctgactacaccctgggcgcaactgcagcattacccccggtatctccaggca
atacagaagcggctggaaaagtaccagcgggaccttaatcgggaacggttattatctgat
cagttgcaacagtattggcagcgttataaaggtctgcgtgataaaaacctgacgcagggc
gtgtttgatccggcgctcgaagagtttcgctggatgctggaggaataccgcgtatccctg
tttgcccaggggctgggcacccaggtggcggtatcggacaagcgcctgcagcagcagtgg
cgccaattgcaggcctga
DBGET
integrated database retrieval system
