Marinobacterium rhizophilum: KDW95_17385
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Entry
KDW95_17385 CDS
T08609
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDW95_17385 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrz03021
]
KDW95_17385 (rpoB)
03400 DNA repair and recombination proteins [BR:
mrz03400
]
KDW95_17385 (rpoB)
Enzymes [BR:
mrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDW95_17385 (rpoB)
Transcription machinery [BR:
mrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDW95_17385 (rpoB)
DNA repair and recombination proteins [BR:
mrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDW95_17385 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UTW11029
UniProt:
A0ABY5HIA8
LinkDB
All DBs
Position
3881604..3885704
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYRRFLQFGGDAGERREEGLHAAFNSV
FPIQSYSGNAALEYVGYRLGEPVFDVKECQMRGVTYAAPLRVKVRLVIYDRESSTKAVKD
IKEQEVYMGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATVLLRALGYQTEEILEIFFNNTNWTLTDDS
IRMELVPERLRGETMSFEIKDPEGNVVVEAGRRITPRHISKMAQAGMTELEVPMEYLVGK
AMAKDVVDPATGEVISLCNAEITEDLVNKMRAVGLDAFETLYTNDLDCGSFISETLRVDS
TRSQIEALVEIYRMMRPGEPPTKESAESLFENLFFTDERYDLSGVGRMKFNRRLGRDEIT
GPGVLSKEDILAVMETLIDIRNGNGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESENLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPYRRVI
DGQVTDDVDYLSAIEENKYVIAQASATMDENKRLVDDLVAVRHLNEFTVMAPDKIQYMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVASDSGVC
VVASRGGEIESVDAGRIVVRVHDDEVQAGDAGVDIYNLTKYTRSNQNTCINQRPIVRPGD
LVQRGDIMADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGESALAKLDESGVVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTIGKVIDVQVFIRDGVPKDERALSIEKSELNA
IRKDLNDEFRIVEQATFERLAKVMVGLKADGGAGLAKGEEITESFLGALKHSEWFKIRVS
DEAVSEQLELARKQLEERRENLDKRFEDKKRKLQTGDDLAPGVLKIVKVYVATKRHVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQVLETHMGAAAKG
LGRKINEMLEVERAKAEKVKDLRAFLGEIYNGDHGAGKACRHEGLEDFSDAEILDLAHNL
KGGVPIATPAFDGAKEVELKTLLRLAGLDESGQSTLFDGRSGEKFDRKVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGNHQMEPGMPESFNVLIKEIRSLGIDIELEND
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcatatactgagaagaaacgcatccgcaaggactttggcaagctgccacaa
gtcatggatgtgccttacctgctggctatccagctcgattcctaccgtcgattcctgcag
tttggtggagacgcgggcgagcgtcgcgaagaaggtctgcacgctgcattcaattccgta
ttcccgatccagtcctattccggcaatgctgcgctggaatacgtgggctatcgtctcggt
gagccggtttttgatgtaaaagaatgccagatgcgtggcgtgacctatgccgcacccttg
cgagtcaaagtgcgcctggtgatctatgatcgcgaatccagcaccaaagcggtcaaggac
atcaaggagcaggaagtttacatgggcgaaatgccgctgatgaccgataacggcaccttt
gtcgttaacggcaccgagcgcgttatcgtttcccagttgcaccgctcacctggcgtgttc
tttgatcacgacaagggcaagacccactcatccggcaagctgctgtactccgcgcgtatc
attccttaccgcggttcctggctggacttcgaattcgatcccaaggataacctgttcgtc
cgtatcgaccgtcgccgcaagctgcctgcgaccgtcctgctgcgcgccctgggttaccag
acagaagaaatcctcgagatcttctttaacaacaccaactggaccctgaccgacgacagc
atccgcatggagctggtgccggagcgtctgcgtggtgaaaccatgtcgttcgagatcaag
gatcccgaaggcaacgtggtggttgaggctggccgtcgtatcacgccgcgccacatcagc
aagatggcacaggccggcatgaccgagctggaagtgccgatggaatacctggtcggcaag
gcaatggcgaaagacgtcgttgatccggccaccggtgaagtcatctccctgtgcaacgcc
gaaatcaccgaagatctggtgaacaagatgcgtgccgtgggcctggatgccttcgaaacc
ctgtacaccaacgacctggactgcggctccttcatctccgagacgctgcgtgtcgacagc
actcgcagccagatcgaagcgctggtcgaaatctaccgcatgatgcgcccgggcgagccg
ccgaccaaagagtcggccgagtctctgttcgagaatctgttcttcaccgacgagcgctac
gacctgtccggtgtgggccgcatgaagttcaaccgtcgactgggccgtgacgaaatcacc
ggtcccggcgtgctgagcaaggaagatatcctggcggtcatggaaaccctgatcgatatc
cgcaacggcaacggtgttgtcgacgatatcgaccacctgggtaaccgccgtatccgttcc
gtgggcgagatggccgagaaccagttccgtgtcggcctggtccgcgttgagcgtgctgtg
cgcgaacgtctgtccatggcagagtccgagaacctgatgccgcaggacctgatcaacgcc
aagccggtagcggcggcggtgaaggaattcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagatcacgcacaagcgtcgtgtctccgcactgggccca
ggcggtctgacccgtgagcgcgccggcttcgaagtccgcgacgttcacccgacccattac
ggtcgtgtctgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactcgctg
gcggtctatgcccgcaccaatgactacggcttcctcgagacgccgtaccgtcgcgttatc
gacggccaggtgaccgacgatgtcgattacctgtcggcgattgaagagaacaagtacgtc
atcgcccaggcttcggccacgatggacgagaacaagcgcctggtcgacgacctggttgcc
gtgcgtcacctgaacgaatttaccgttatggcgccggacaagatccagtacatggacgta
tcaccgcgccaggtggtctccgttgctgcatccctgatcccgttcctcgagcacgatgac
gccaaccgcgccctcatgggttccaacatgcagcgtcaggctgtaccgacactgcgcgcc
gacaagccgctggtcggtaccggcatggagcgcaatgttgcgtccgactccggtgtttgc
gtggtggccagccgtggcggcgagatcgagtcggtggatgccggccgtatcgtggtccgt
gtacacgatgacgaagtccaggcaggtgatgccggcgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgcccgatcgtgcgcccgggtgat
ctggtgcagcgtggcgatatcatggctgacggtccgtccgtcgacatgggcgaactggcc
ctgggccagaacatgcgcatcgccttcatgccctggaacggttacaacttcgaggactcc
atcctcatctccgagcgtgtggtacaggaagatcgcttcactaccatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagctgggaccagaggaaatcacctccgacatcccc
aacgtcggtgaatccgccctggccaagctggacgagtccggcgtggttcatatcggtgct
gaagtgggtcctggcgacatcctggtcggcaaggtaacccccaagggtgaaacccagctg
acgccggaagaaaagctgctgcgtgcgatcttcggcgagaaggcgtccgacgttaaggat
acttccctgcgcgtcaagaccggcaccatcggcaaggttatcgatgtccaggtcttcatc
cgtgacggtgtacccaaggacgagcgcgcgctgtccatcgagaagagcgagctgaacgcc
atccgcaaggaccttaacgacgaattccgtatcgtcgaacaggcgaccttcgaacgtctg
gccaaggtcatggttggcctcaaggctgacggtggcgcaggtctggccaagggcgaggaa
atcaccgagtccttcctgggtgccctcaaacactccgaatggttcaagatccgtgtgtcc
gacgaagccgtctccgagcagctcgagctggcgcgcaagcagctggaagagcgtcgcgag
aacctcgacaagcgcttcgaagacaagaagcgcaagctgcagaccggcgacgatctggca
ccgggcgtcctgaaaatcgtcaaggtttacgtcgcaaccaagcgccacgtacagccgggc
gacaagatggccggccgtcacggtaacaagggtgttatctccgttatcatgccggttgaa
gacatgccttacgacgagaacggcgagccggtcgacatcgtactgaacccgctgggtgta
ccgtcgcgcatgaacgtcggtcaggttctcgaaacccacatgggtgccgccgccaagggg
ctgggtcgcaagatcaacgagatgctggaagtcgagcgcgccaaggccgagaaggtcaag
gacctgcgtgccttcctgggcgagatctacaacggcgatcacggcgcgggcaaggcctgc
cgccacgaaggtctggaagacttcagcgatgccgagattctcgacctggcccacaacctc
aagggcggtgtgccgatcgcgacaccggcgtttgacggtgccaaggaagtcgaactcaag
accctgctgcgcctggcgggccttgacgagagcggtcagtcgaccctgtttgacggtcgc
agcggcgagaaattcgaccgcaaggtgaccgtgggttacatgtacatgctgaagctgaac
cacctggtagacgacaagatgcacgcgcgttctaccggctcctacagcctcgttacccag
cagccgctgggtggtaaggcgcagtttggtggccagcgcttcggtgaaatggaggtctgg
gccctggaggcgtacggcgctgcctacaccctgcaggaaatgctcaccgtcaagtccgat
gacgtcaatggtcgtaccaagatgtataaaaacatcgtcgatggtaaccaccagatggaa
ccgggcatgccggagtccttcaacgtgctgatcaaggagattcgttctctcggtatcgat
atcgagcttgagaacgattaa
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