Marinobacterium rhizophilum: KDW95_17390
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Entry
KDW95_17390 CDS
T08609
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mrz
Marinobacterium rhizophilum
Pathway
mrz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mrz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDW95_17390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrz03021
]
KDW95_17390 (rpoC)
03400 DNA repair and recombination proteins [BR:
mrz03400
]
KDW95_17390 (rpoC)
Enzymes [BR:
mrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDW95_17390 (rpoC)
Transcription machinery [BR:
mrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDW95_17390 (rpoC)
DNA repair and recombination proteins [BR:
mrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDW95_17390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTW11030
UniProt:
A0ABY5HIE0
LinkDB
All DBs
Position
3885772..3890022
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLLNLLKSQGQSDEFDSIKISLASPEMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGVICEKCGVEVTLAKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMMDMTLRDIERVLYFESFVVIDPGMTTLERGQLMNDEQYFEALEEFGDDFDARM
GAEAVQELLLSINLEETIQQLREEIPATNSETKIKKLSKRLKLMESFYKSGNNPAWMIMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLELRGYATTIKAAKKMVEREEPLVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERVNALGEGMAFADIEEVARAHGAK
QVDLQARVKVRIHEVINDIEGNVEERTEIKETTVGRALLFAIVPKGLPFSLVNQSMKKKA
ISRLLNEAYRRCGLKDTVIFADQLMYTGFRQATVSGSSIGVNDFVIPDEKVLIIDEAEAE
VKEIERQFADGLVTQGEKYNKVIDIWSRANEVLAKRMMDNLKTEPVLDLDGEIVKDSEGA
DLIQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITNEDCGTENGLLLTPLIEGGDVV
VRLGDRVLGRVVAKDILDPSGKDVLIDAGTLIDEAWVHRLESDERYSSIDEIVVRSAITC
DETHGICSACYGRDLGRGHLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVD
NIQVKNGGEVRLHNLKFVERLDGKLVATSRSGELGVTDEHGRERERYKLPYGAVIKVKEG
AIVNPGDIVANWDPHTHPIITEGAGRLQFHGMDDGVTVKRQQDELTGLSSIEVLEAKDRP
QAGKDIRPMIKLLNSDGSDMMHPGTDSPVQYLLPPKAILNLADGAEVAVGDVLARIPQEG
SVNKDITGGLPRVADLFEARKPKESAILAEISGVMTFGKETKGKRRILLTPADGDPFEIM
MQKWRNLNVFEGEQVETGEVISDGPSNPHDILRILGVGELAKYIVAEIQDVYRLQGVLIN
DKHIEVIVRQMLRKVEILTSGDSTFIPGEQVEFSAVAEENAALEAEGKIPAKFERVLLGI
TKASLATESFISAASFQETTRVLTEGAVTGKKDYLRGLKENVVVGRLIPAGTGLAYHRER
KRKRVAQAQPGTATVSAEEVQQALTEALNASLSDSE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatctgctgaagtcccagggacagtctgacgagttcgactcgatc
aagatctccctggcttcaccggaaatgatccgctcttggtcattcggtgaagttaaaaag
ccggaaacgatcaactaccgtaccttcaagcccgagcgcgaaggccttttctgcgccaag
atctttggcccggtaaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggtgttatctgtgagaagtgtggcgttgaagtcaccctggccaaggtccgtcgtgac
cgcatgggtcacatcgaactggcgagcccggttgctcacatctggttcctgaaatccctg
ccgtcccgtatcggcctgatgatggacatgacactgcgcgacatcgagcgcgtgctgtac
ttcgaatccttcgtcgttatcgatccgggcatgaccacgcttgagcgcggtcagctgatg
aatgacgaacagtacttcgaagcgctggaagaattcggcgacgatttcgatgcccgcatg
ggtgccgaagccgtgcaggagctgctgctgtccattaacctggaagaaactatccagcag
ctgcgcgaagagatcccggcgaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctcaagctgatggagtccttctacaagtcgggcaacaacccggcctggatgatcatgagc
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacctccgatctgaacgatctgtaccgtcgcgtcatcaaccgcaacaaccgtctgaag
cgcctgctggatctgaacgcacctgatatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgatgcactgctggacaacggtcgtcgcggccgtgccatcaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcagggtcgtttccgtcag
aaccttctgggcaagcgtgtcgactactccggccgttccgttatcgtggtcgggccgtac
ctgcgcctgcaccagtgcggtctgcccaagaaaatggcgctggaactgttcaagccgttt
atcttctccaagcttgagctgcgtggctatgccaccaccatcaaggcggccaagaagatg
gttgagcgcgaagaaccgctggtctgggatatcctggacgaagttatccgcgaacatccg
gtgctgctcaaccgtgcaccgacactgcaccgtctgggcatccaggcgttcgagccggta
ctaatcgaaggcaaggccattcagctgcacccgctggtttgtgcggcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgacgatcgaggcgcagcttgaagcc
cgtgccctgatgatgtccaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtaccgtcccaggacgtggtactgggtctgtactggatgacccgtgagcgcgttaacgct
ctgggtgaaggcatggccttcgcggacatcgaagaagtggcccgcgcccacggcgccaag
caggttgacctgcaggcccgcgtcaaggtgcgtatccacgaggtcatcaacgacatcgaa
ggcaacgtcgaagagcgtacagaaatcaaggagaccaccgttggtcgtgccttgctgttc
gctatcgtgcccaagggtctgccgttctcgctggttaaccagtcgatgaagaagaaggca
atctcccgcctgctgaacgaggcgtaccgtcgctgcggtctgaaagataccgttatcttt
gccgaccagctgatgtacaccggtttccgtcaggcaactgtgtccggctcctccatcggt
gtgaacgacttcgttattccggacgagaaagtcctgatcatcgacgaagccgaagccgaa
gttaaggaaatcgaacgccagttcgccgacggtcttgtgacccagggcgagaagtacaac
aaggttatcgacatctggtcccgtgccaacgaagtgctggccaagcgcatgatggacaac
ctgaagaccgagccggtgctggatctggatggcgagatcgtcaaggacagcgaaggcgcg
gacctgatccaggaatccttcaactcggtttacatgatggccgactccggtgcccgaggc
agcgccgcccagatccgtcagctggcgggtatgcgtggtctgatggccaagccggatggc
tcgatcatcgaaacgccgatcaccgcgaacttccgtgaaggtctgaacgtactgcagtac
ttcatctcgacccacggcgcgcgtaagggtctggcggatacggcactgaaaacggcgaac
tccggttacctgacgcgccgtctggtcgacgtggcgcaggatctggtcatcaccaacgaa
gactgtggcaccgaaaacggtctgctgctgacgccgctgatcgaaggcggagacgtcgtc
gtgcgtctgggcgatcgtgtgctgggtcgtgttgtggccaaggatatcctggacccgtcc
ggcaaggatgtgctgatcgatgccggtaccctgatcgacgaagcctgggtacaccgtctg
gaaagcgacgaacgttactcttcgatcgacgagatcgtggtgcgctctgccattacctgt
gacgaaacccacggtatctgttctgcctgctacggtcgcgacctgggtcgtggtcacctg
gttaaccgcggtgaagccgtgggtgttatagcagcccagtccatcggtgagccgggtacc
cagctgaccatgcgtaccttccacatcggtggtgcggcatcgcgagcggcggctgttgac
aacattcaggtgaagaacggtggtgaagtccgtctgcacaacctgaagttcgtagagcgc
ctggatggcaaactggttgctacctcccgctccggcgaactgggtgtgaccgacgagcac
ggccgtgagcgcgagcgctacaagctgccgtacggtgccgtgatcaaggtcaaggaaggc
gccattgtgaatccgggcgacatcgttgccaactgggatccgcatacgcatccgatcatc
accgaaggcgcgggtcgcctgcagttccatggcatggacgacggtgtcaccgtcaagcgc
cagcaggacgaactgaccggcctgtcttccattgaagtactggaagccaaggaccgtccg
caggcgggcaaggatatccgtccgatgatcaagctgcttaatagcgatggcagcgacatg
atgcacccgggtaccgactctccggtacagtacctgttgccgcccaaggcgatccttaac
ctggccgacggtgcagaagtggcggtcggtgatgtactggcgcgtattccgcaggaaggc
agcgtcaacaaggacatcaccggtggtctgccgcgcgttgccgacctgttcgaggcgcgc
aagccgaaagaatctgcgatcctggcagaaatctccggtgtcatgaccttcggcaaggaa
accaagggcaaacgtcgcatcctgctgacgccggccgatggtgatccgttcgaaatcatg
atgcagaagtggcgtaacctgaacgtcttcgaaggcgagcaggttgaaacgggtgaggtc
atctccgacggtccgtccaacccgcacgacattctgcgcatcctgggtgtgggtgagctg
gccaagtacatcgtggccgagatccaggacgtttaccgtctgcagggcgtactgatcaac
gacaagcacatcgaggttatcgttcgccagatgctgcgcaaggtcgagatcctgacctcc
ggcgactccacctttattccgggtgagcaggtcgagttcagcgccgtggcagaagaaaac
gctgcgctggaagccgaaggcaagattccggcgaagttcgagcgagtgctgctgggtatt
accaaggcatcactggcgaccgaatccttcatctccgcggcctccttccaggagaccacc
cgtgtgttgaccgaaggtgcggtaacaggcaagaaagactacctgcgtggtctgaaagaa
aacgttgttgttggtcgactgattccggccggtaccggtctggcgtatcaccgcgagcgc
aagcgcaagcgtgtagcccaggctcaacccggtacggcgaccgtgagtgcggaagaagtg
cagcaggcactgaccgaagcgctgaatgcgtcactgtcggattctgaataa
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integrated database retrieval system
