Mycobacterium sp. JS623: Mycsm_00885
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Entry
Mycsm_00885 CDS
T02423
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Mycsm_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_00885
Enzymes [BR:
msa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Mycsm_00885
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mycsm_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AGB21315
LinkDB
All DBs
Position
complement(904204..907440)
Genome browser
AA seq
1078 aa
AA seq
DB search
MGLHLHRAERTDLLADSLGHLLSTPLPDPFADELIIVPAKGVERWLSQRLSHILGRGAGH
DGICAGISFRNPHSLIAEITGTIDDDPWSPDAMVWPLLEVIDASCTADWCKTLATHLGHF
EAGEEKELRQGRRYAVARRLAGLFASYARQRPQLLIDWERDADGYIASDLDWQPPLWRAL
LDKVDADPPHVRHAKTLARLQESPLDLPERLSLFGHTRLPSTEVELLTALATHHHLHLWL
PHPSDDLWQKLDTDRGPIPRRDDTSHRNVAHPLLATLGRDLRELQRGLPVDPDTDECLGG
STHPDTLLGWLQSDIAANAVRPAGRTHTPTDRSIQVHSCHGPARQIDVLREVLLGLLSDD
PTLEPRDILVMCPDIETYAPLIVAGFGLGDMIHGVHPAHRLRVRLADRSLVQTNPLLGVA
SQLLSLAGSRATSSEVLNLAAAAPVRARFEFSDDDLEDITRWVREANIRWGFDKEDRQPF
GVDFIQNTWRFGIDRVLAGVAMSDDSHAWLDTTLPLDDVSSNRVELAGRLAEYIDRLHRV
VESLTGTRPLREWLTALEHGIDLLARVNDDDAWQTSQLQREFNEVLRQAGPRAETVMRLP
DIKALLERHLAGRPTRANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLGVVDGDD
VLARNPMTGERDIRSEDRQLLLDAIQATTEHLVITYTGANEYSGHERPPAVPLAELLDAL
DLTTAEPVRDAVVVRHPLQPFDTRNVVPGDLIPDKPFTFDPTVLRAARVRSAGRAEKPPF
ISGPLPAPPTEDVVLADLAAFFRDPVKGFFRALDYTLPWEIDGVEDAMPVDINALEEWTV
GDRMLRDMLDGMQSDQAREAEWRRGTLPPGRLGWRKATEIRDQAALLAEVGRHYRGVASR
AIDVDIDLDGRRLTGTVSPVFSERLVAVTYSKLDGRHLLQSWIPLLALLAHAPRTDWSAI
VIGRPKRGTTPREEVLGRSADSAVELLADLVAIYDAGRREPLPLPIKTSYAWAEAKHTHG
DPERAAMYRWRSDRYPGEDAEKAHERAFGKGAWLSELINRGLDEYASRLWLPMLNALG
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgcacctccaccgcgctgagcgcaccgatctcctcgccgactccctcggccat
ctgctgtccactcccctacccgaccccttcgccgacgagctgatcatcgtccccgccaaa
ggcgtcgaacggtggctgagccagcggctgtcccacatcctcgggcgcggtgccgggcac
gacggcatctgcgcaggcatctcgttccgcaatccgcactccctgatcgccgagatcacc
ggcaccatcgacgacgacccctggtcgcccgacgcgatggtctggccgctgctcgaggtc
atcgacgccagctgcaccgcggactggtgcaagacgttggccacgcatctcggccacttc
gaagccggcgaggaaaaggagctgcgccagggccggcgctacgccgtcgcccgtcgactc
gccggcctgttcgcctcctacgctcggcagcgcccgcaactgctgatcgactgggaacgt
gatgccgacggttacatcgcatcggatctcgactggcagccgccgctgtggcgcgcgctg
ctcgacaaggtcgacgccgaccccccgcatgttcgccacgcgaaaacccttgcgcgactg
caggaatcaccgctggacctgccggagcggctgtcgctgttcgggcacacccggctgccg
tccaccgaggtcgagctgctcaccgccctggccacccaccaccatctccatctctggctg
ccccacccgagcgacgacctctggcagaagctcgacaccgaccgtggccccatcccccgc
cgcgacgacaccagccaccgcaacgtcgcgcacccgctgctggccaccctcggccgtgat
ttgcgcgagcttcagcgcggtctgcccgtagacccggacaccgacgaatgtctcggtggc
tcaacgcatcccgacactctgctcggctggctgcagtcggacatcgccgccaatgcggtc
agacccgccggccgcacgcacacgccaacagatcgctccatccaagtgcacagctgccac
ggcccggcccgccagatcgacgtgctgcgcgaggtcctgctcggcctgctctccgacgac
cccaccctggagccacgcgacatcctcgtcatgtgcccggacatcgagacctacgcgccg
ctgatcgtcgccggtttcggcctcggcgacatgatccacggcgtgcaccccgcgcaccga
ctgcgggtcaggctggccgaccggtcgctggtccaaaccaacccgctgctcggcgtcgcg
agccaactactcagcctcgcgggcagccgggccacgtccagcgaggtgctcaacctcgcg
gccgcggcgccggtgcgggcgcgcttcgagttcagtgacgacgacctcgaggacatcacc
cgctgggtacgcgaagccaacatccgctggggtttcgacaaggaggacaggcagccgttc
ggcgtcgacttcatccagaacacttggcgattcggcatcgaccgtgtcctcgcgggcgtc
gcgatgtccgacgattcgcacgcctggctcgacaccacgctgccgctcgacgacgtcagt
agtaaccgcgtcgaactggctggccgcctcgcggagtacatcgaccggttgcaccgcgtc
gtcgaatcactcaccggcacacggccattgcgcgagtggctgaccgcgctggagcacggc
atcgatctgctggccagggtcaacgatgacgacgcgtggcagaccagtcagctgcaacgc
gaattcaacgaggtgctgcgccaagccggcccgcgcgccgagacagtcatgcggctgccc
gacatcaaggcgctcctggagcgccatctcgccggtcggcctacccgcgccaacttccgg
accggcacgttgacggtctgcacgatggtgccgatgcggtcggtgccgcaccgggtggtc
tgtttggtcggtctcgatgacggggtgttcccccggctcggtgtggtcgacggcgacgac
gtgctggcgcgcaatccgatgaccggcgagcgcgatatccgttctgaggaccggcaattg
ctgctcgacgctatccaggccaccaccgagcacctcgtgatcacgtataccggcgccaac
gaatactccgggcacgaacgcccgcccgcggtgccgctggccgagctgctcgacgcgctg
gacctgaccacggctgagccagtgcgcgacgcggttgtcgtccgacacccgttgcagccc
ttcgatactcgcaatgtcgttcccggtgacctgatccctgataaaccattcacctttgac
ccgacggtgctgagggccgcacgcgtgcgctccgccggccgcgccgagaagccacccttc
atctccggcccgttgccagcgccgccgaccgaggacgtggtgctcgctgaccttgccgcg
ttcttccgggatccggtaaaggggttcttccgcgcactggactacacgctgccgtgggag
atcgacggggtcgaggacgccatgccagttgacatcaacgcgctcgaggagtggacggtc
ggcgaccgcatgctgcgcgacatgctcgacggcatgcagtccgatcaagctcgggaggcc
gaatggcggcgcggcacactgccgcccggtcggctgggctggcgcaaggccaccgagatc
cgcgaccaggcggcgctgttggcggaagtcgggcggcactaccgcggcgtcgcatcgcgg
gccatcgacgtcgacatcgacctcgacggtcgacggttgaccggcactgtgtcaccggtg
ttcagcgaacgactcgtagcggtgacgtactccaagctcgatggtcgccatctgctgcag
tcatggattccgttgctggcgttgctcgctcacgcgccgcgcaccgactggtcggcgatc
gtcatcggccggcccaaacgcggcacgacgccgcgcgaggaggtgctgggccgttcggcg
gactcggccgtcgaactgctcgccgaccttgtcgccatctacgacgcaggacggcgtgag
ccgctgccgcttccgatcaagacgtcctacgcgtgggcggaggccaaacacacgcacggc
gatcccgagcgagccgcgatgtatcggtggcgctccgatcgctaccccggcgaagacgcc
gagaaggcgcacgagcgggcattcggcaagggcgcctggctgtctgagctcatcaatcgc
ggactcgacgagtacgccagccggctgtggttaccgatgttgaacgcgctcgggtga
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