Mycobacterium sp. JS623: Mycsm_00961
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Entry
Mycsm_00961 CDS
T02423
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mycsm_00961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msa03021
]
Mycsm_00961
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_00961
Enzymes [BR:
msa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mycsm_00961
Transcription machinery [BR:
msa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mycsm_00961
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mycsm_00961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MepB-like
TarH
Motif
Other DBs
NCBI-ProteinID:
AGB21387
UniProt:
L0ITV5
LinkDB
All DBs
Position
985603..989556
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAVEDQRDADLEARAQKLEAD
MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDEVL
YRELVDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA
AFQSNSNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTTEVPGGIGEYT
AAAKDQPETGVYSSPAEAIMAMDRGALSVRSKIRVRLTQLRPPAEVEAELFGDEGWKPGD
AWTADTTLGRVLFNELLPLGYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVIVPPEKQEILERYEAEADRIEKQYQRGALNHEERNGELVKIWQK
ATEEVGEALRSHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT
LAELQDKSLVRDQHIETSAYARTLAADALDAKGNVVVERGHDLGDPAIEALLAAGITEVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGGDIVGGLPRVQELFEARVPRDKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVVYDK
LSRRQRLKVFKHEDGTERLLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP
AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgagctccggatcggtcttgccaccgccgacgacatc
cgtaactggtcgttcggtgaggtcaagaagccggaaaccatcaactaccgcacattgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgttccctcgcgcctcggctatctgctggacctg
gcgcccaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgccgtggac
gacgagatgcgccacaacgagctgtccactctcgaggccgagatggccgtcgagcgcaag
gccgtcgaggatcagcgcgacgccgatctcgaggcccgggcgcagaagctcgaagccgac
atgaaggagctcgaggacgagggcgccaagtccgacgtcaagcgcaaggttcgcgacggc
ggcgagcgtgagatgcgtcagctccgcgaccgcgcccagcgtgagctggaccggctcgag
gagatctggaccaccttcaccaagctggctcccaagcagctgatcgtcgacgaggtgctg
taccgcgagctcgtcgaccgctacggcgagtacttcgagggcgccatgggcgcggagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgacagcctgcgcgacacc
atccgtaacggcaagggccagaagaagcttcgtgctctcaagcgtctgaaggtcgtcgcg
gcgttccagtccaacagcaactcgcccctgggcatggtgctcgacgccgtaccggtgatc
ccgccggaactgcgtccgatggtgcagctcgacggtggccggttcgccacctcggacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggttgacgcg
ctgttcgacaacggccgtcgcggccggcccgttaccgggccgggcaaccgtccgctgaag
tcgctctcggatctgttgaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctt
gtcgatctgaaccacgcacagaacatcaagagcgccaagcggatggtcgagcgtcagcgc
ccgcaggtgtgggacgttctcgaagaggtcatcggcgagcacccggtgctgctgaaccgc
gcaccaacgctgcaccgcctcggcatccaggctttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgttggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagtgcggaggcacaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcctgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgacgggtctgttctatctgaccaccgaggttccgggtggcatcggcgaatacacc
gccgccgccaaggatcagccggagactggcgtgtacagctcgcctgccgaggccatcatg
gcgatggaccgcggcgcgctgagtgtgcgttccaagatccgggtgcggctgacgcagctg
cgtccgcctgccgaggtcgaagccgagctgttcggcgacgagggttggaagccgggcgac
gcctggacggccgacaccacgctgggccgggtgctgttcaatgagctgctcccgcttggg
tatccgttcgtcaacgagcagatgcacaagaaggtgcaggcgcggatcgtcaacgatctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggc
ttctactgggccacgcgttcgggtgtcacggtctcgatggccgacgtcatcgtgccgccg
gagaagcaggagatcctcgagcgctacgaggccgaagccgaccggatcgaaaagcagtat
cagcgtggcgctctcaaccatgaggagcgcaacggtgagctcgtgaagatctggcagaag
gccaccgaagaggtcggcgaggcgctgcggtcgcactacccggcggacaacccgatcatc
acgatcgtggactcgggcgcgacgggtaacttcacgcagacgcgaacgctggccggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcctcgttc
cgtgagggcctgacggtgctggagtacttcatcaacacccacggcgcccgaaagggtctg
gcggacaccgctcttcgtactgccgactcgggttacctgacccgtcgtctggtggacgta
tcgcaggacgtcatcgttcgcgagaccgactgcgagaccgagcgcggcatcacggtcacg
ctggccgagctgcaggacaagtctctggtgcgcgatcagcacatcgagacttcggcctac
gcacggactttggccgctgacgcgctggacgcgaagggcaacgtggtcgtcgagcgcggt
cacgaccttggcgacccggcgatcgaggcactgctcgcggccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggtaccggcgtctgcgcgatgtgctacggccgt
tcgatggcgacgggcaagctggtcgacatcggcgaggcggtcggcatcgtcgccgcgcag
tccatcggtgagcccggcacgcagctgaccatgcgtacgttccaccagggtggcgtcacc
ggcggtggcgacatcgtcggtggtctgcctcgcgtgcaagagctgttcgaggctcgtgtg
ccgcgtgacaaggcgccgatcgccgacgtcaccggtcgcgtgcgcctcgaggagggcgag
cgcttctacaagatcaccatcgttcctgacgatggtggcgaagaagtggtgtacgacaag
ctctctcgtcgtcagcgcctgaaggtgttcaagcacgaggacggtaccgagcggctgctt
tccgacggcgaccacgtcgaggtcggccagcagctgatggaaggctcggccgatccgcac
gaggtgctgcgtgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgcgctcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgaacgtggcgagttcgagaccgagaaccgtcgggtggttgccgagggcggcgag
cccgcggcgggtcgcccggtgctgatgggtatcacgaaggcgtcgctggccaccgactcg
tggttgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgaatggtctgaaggagaacgtgatcatcggcaagctgatcccg
gcaggtacgggcatcagccggtaccgcaacatccaggtgcagccgaccgaagaggctcgg
gccgcggcgtacacgatcccctcctacgaggatcagtactacagcccggacttcggccag
gccaccggtgccgcagtgccgctggacgattacggctacagcgactaccgctag
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integrated database retrieval system
