Mycobacterium sp. JS623: Mycsm_01445
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Entry
Mycsm_01445 CDS
T02423
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03420
Nucleotide excision repair
msa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mycsm_01445
03430 Mismatch repair
Mycsm_01445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_01445
Enzymes [BR:
msa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mycsm_01445
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mycsm_01445
MMR (mismatch excision repair)
Other MMR factors
Mycsm_01445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
AlkA_N
Motif
Other DBs
NCBI-ProteinID:
AGB21856
UniProt:
L0IUL0
LinkDB
All DBs
Position
1443089..1446313
Genome browser
AA seq
1074 aa
AA seq
DB search
MTPRYSPAELASALGLFAPTDEQAAVIAAAPGPLVVIAGAGAGKTETMAARVVWLVANGY
ARPGEVLGLTFTRKAAGQLLRRVRTRLARLAGAGLVPGGCDAADDPATVSTYHAFAGNLL
REHGLLLPVEPDTRLLSETELWQLAFRVVCEHPEHLDTDKTPASVTAMVLRLAGQLAEHL
VDTAQLRDTHVELERLVHTLPAAPFQRDRGPSQWLLRMLATQTERTQLVPLIEALHARMR
AEKVMDFGMQMASAARLASAFPQVGQQLRERYRVVLLDEYQDTGHAQRVALSSLFGRGVD
DGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRADGTPAPTLELRTSWRNPPRALHLA
NAVSAEARRRSVAVRALRPRPDAQPGVIRCALLNDVAAEHDWVADHVAALYHGADGPTPT
AAVLVRRNADAAPMADALTARGVPVEVVGLAGLLSVPEVADLVAMLRLVADPTAGAAAMR
VLTGPRWRLGGRDIAALWRRAVELDDRPTREATTEQIVAQAAADADAACLADAICDPGPA
HTYSVAGYPRIVALGRELTALRAHLTHPLPDLIAEVRRVLGLDAEVRAARPVAAGWSGTE
HLDAFADVVADVAGRPGATVQGLLAYLDAAEQVENGLAPAEVSVATDRVQILTVHAAKGL
EWQVVAVPHLCGRVFPSTASTRTWLTDAGDLPPLLRGDRATVSELGVPVLDTSDVNDRKR
LSDKISDHKRSLEQRRIDEERRLLYVALTRAEDTLLLSGHHWGASEAKPRGPSDFLCELK
DIIETSEAAGDPCGVIDHWAPAPPDGTPNPLRDRAIEALWPTDPAGTQRTRVDSGAAMVI
HAMSGDLTAKTDDVDGWVADVDALLAERDRVADAPTPALPTQLSVSTLVELGRDPDAVAQ
RLRRRLPTRPDPHALLGTAFHDWVQRFFHAERLFDLDDLPGAVDRDAGAAEELAELQAAF
AVSTWAARTPIDVEVPFDMVIGGRVVRGRIDAIFADDDGGTTVVDWKTGDPLDTPEANRH
AAIQLAVYRLAWAQLHKCPIETVRAAFHYVRSSRTVTPDTLPGPDDLIALIEAA
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgcgctacagcccggccgaactggcctctgcgctcggccttttcgcgcctacc
gacgagcaggcggcggtgatcgccgctgcgccgggcccgctcgtggttatcgcaggcgcc
ggtgcgggcaagacggaaaccatggcggccagggtggtgtggttggtggcgaatggctac
gcccgccccggggaggtacttggcctgaccttcacacgcaaggccgcgggtcagctgctg
cgacgtgtccgtacgcggctggcacggctggcaggcgccggtctggttcccggcggttgc
gacgcagccgacgaccccgcgaccgtcagcacctatcatgcgttcgccggcaacctgctg
cgcgaacacgggctgctgttgccagtcgagcccgacacccggctgctcagcgaaacagag
ttgtggcaattggcatttcgagtcgtgtgcgagcaccccgagcatctcgacaccgacaag
actccggcctcggtcacggcgatggtgctgcggctcgcgggccagctggccgaacatctc
gtggacaccgcacagctgcgcgacacccacgtcgaactcgaacgactcgtgcatacgttg
cctgcggctccatttcaacgcgaccgcggacccagccagtggctgctgcgcatgttggcc
acccaaaccgaacgcacgcaactggtcccgctgatcgaggccctgcacgcgcgcatgcgg
gccgagaaggtgatggacttcggcatgcagatggcctcggccgcccggctggcttcggcg
ttccctcaagtcggccagcagctgcgcgaaaggtatcgggtggtcctgctcgatgagtac
caagacaccgggcacgcccaacgcgtcgcgctgtcgtcactgttcggccgtggcgtcgac
gacggcctcgcgctgaccgcggtcggtgatccgatccaatcgatctacggttggcggggt
gcctcggcgaccaacctgccgcggttcaccaccgacttcccgcgcgccgacggcaccccg
gcgcccaccctggaactgcggaccagttggcgcaatccgccgcgggcgctccatctggcc
aatgccgtgtccgccgaggcgcggcggcgttccgtcgcggtgcgcgccttgaggcccagg
cccgacgcccagcccggcgtaatccgatgtgccttgctgaatgacgttgccgccgaacat
gattgggtcgcagatcatgtcgcggcgctgtatcacggtgctgacggccctacaccaacc
gcagccgtgctggtgcgccgcaacgcggacgccgcgccgatggcggacgcactgaccgcg
cgtggcgtccccgtcgaggtcgtcggtctggccggacttctttcggtgcccgaggtcgcc
gatctggtggcgatgctgcggctcgtcgcggacccgacggcaggggcagccgcgatgcgg
gtgctcaccggaccgcggtggcggctcggcggtcgtgacatcgccgcgctgtggcggcgc
gcggtcgaactcgatgaccggccgacgcgcgaggcgaccaccgagcagatcgtggctcag
gcagccgccgacgcggacgccgcctgcttggccgatgcgatctgtgaccccggccctgcg
cacacgtattccgttgcagggtatccgcgtatcgtcgcgctcggccgcgagctgacggcg
ctgcgcgcgcacctgacgcatccgctgcccgacctcatcgccgaggtccggcgggtactc
gggctcgacgccgaagttcgtgcggccaggccggtggccgcggggtggtctggcaccgag
catttggacgcgttcgccgacgtggtggccgatgtcgccggtcggccaggggcgacggtg
caggggctgctggcatatctggacgctgccgaacaggtggagaacgggctggcgcctgcc
gaggtgtccgtcgcgacggaccgtgtgcagatcctcaccgtgcacgccgcgaaagggctg
gagtggcaggtcgtggcggtgccgcacttgtgtggcagggtgttcccgtcgacggcgtcg
acgcgaacctggctcaccgacgcgggcgatctgccgccgctgctgcgcggtgatcgcgcg
actgtctccgagcttggcgtgccggtgctggacacgtcggacgtgaacgatcgaaagagg
ttgtccgacaagatctccgatcacaagcgcagcctcgaacagcggcgtatcgatgaggag
cgtcggctgctgtatgtggcgctgacccgcgccgaggacaccctgctgctgtcggggcac
cattggggcgcgtccgaggccaagcctcgtggtccctccgattttctctgtgagctcaag
gacatcatcgagacgtcggaggcagcgggcgatccgtgtggcgtcatcgaccactgggcg
cctgcgccgccggatggcacgccgaacccgttgcgcgacagggcaatcgaagcgctgtgg
cccaccgatccggccggtacgcaacgaacccgtgtggacagcggtgcggcgatggtgatc
cacgcaatgtcgggtgatcttaccgcaaagaccgacgacgtcgacggctgggtggccgac
gtcgacgccctgctggccgaacgcgaccgcgtggccgacgcgcccaccccggctctgccg
acacagctgtcggtgagcacactggtcgagctcggtcgcgaccccgacgccgtcgcgcaa
cggctgcgccgtcggctgccgacccggcctgacccacacgccttactgggcaccgctttt
cacgactgggtgcagcgcttcttccacgccgagcgactgttcgacctcgacgatctgccc
ggggccgtcgaccgcgacgccggcgccgccgaagagctcgccgagttgcaggccgcgttc
gcagtgtcaacgtgggcagcccgcacgcccatcgatgtggaggttccgttcgacatggtc
atcggcgggcgcgtggtgcgcggacgcatcgacgccatcttcgccgacgacgacggcggc
accacggtggtcgactggaagaccggcgacccgctcgacacgccagaagccaaccggcat
gcggcaattcagctggccgtataccggctggcgtgggcgcaactacacaagtgcccgatc
gagacggtgcgcgcggcattccattacgtacgatccagccgaacggtcaccccggacacg
ctgcccggccccgatgacctcatcgctttgatcgaggcggcctag
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