Mycobacterium sp. JS623: Mycsm_03893
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Entry
Mycsm_03893 CDS
T02423
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03030
DNA replication
msa03430
Mismatch repair
msa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mycsm_03893
03430 Mismatch repair
Mycsm_03893
03440 Homologous recombination
Mycsm_03893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msa03032
]
Mycsm_03893
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_03893
Enzymes [BR:
msa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Mycsm_03893
DNA replication proteins [BR:
msa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Mycsm_03893
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Mycsm_03893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AGB24157
LinkDB
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Position
3813137..3815005
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AA seq
622 aa
AA seq
DB search
MAVGVSAYLQRMGQLSFADVDPLADVSLRETTFVVVDLETTGGRPSGEGHDAITEIGAVK
VRGGEVLGELATLVDPGRSIPPQIVALTGITTAMVCNAPTIDSVLPSFLEFSRGAVLVAH
NAGFDIGFLRAAAERLHITWPKPAVLCTVKLARRVLTRDEAPSVRLSALARLFNATTTPT
HRALDDARATVDVLHGLIERVGNQGVHTYTDLRSYLPDVTPAQRSKRHLAKALPHCPGVY
LFRGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRIKEMASLATAVDHVECAHDLEAGVRE
LRLLAAHAPPYNRRSKFPRRWWWVALTDEAFPRFSTVRTPKRNTAIGPFRARADAVETAA
LLARFTGVRTCTTRLGRFSLHACPERELSPCPAPQGITGTEYAAAPARAVELIEGGDSRA
LDAVLAHIADLAERNRYETAARMRDHAAAAIDVLWRGQRLRALAAVDELVAARPDGDGGW
HLAVIRYGQLAAAGNASRGVPPMPVINAICVGAQAVLPTTAPLGGALVEETALITRWLAQ
PGVRIVRAEPGWASPVAAAGRLAQWAATARSARAAAEQKLGSDLLSEPHPTREQLFGRPG
VDRLGGAGQSRLPGGHPFGVAG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcggagtcagtgcctaccttcagcgcatggggcagctgagcttcgcggatgtc
gatccgcttgctgatgtctcgctgcgggagaccaccttcgtcgtcgtggatctggaaacc
accggcggcaggccgtcgggcgagggccacgacgcgatcaccgagatcggggcggtgaaa
gtgcggggcggtgaggtgctcggcgagctggccacgctcgtcgaccctggccgcagcatc
cccccacagatcgttgccctcacgggcatcaccacggccatggtctgcaacgccccgacc
atcgattcggtgttgccatcgttcctggagttctcccgcggcgcggttctcgtcgcgcac
aacgccggcttcgacatcggcttcctgcgcgcggccgccgaacgcctccacatcacctgg
cccaagcccgctgtgttgtgcacggtgaagctggcgcgccgggtgctcacccgcgacgag
gccccaagcgtgcggctgtccgccctggcccggctgttcaatgcgaccaccaccccgaca
caccgcgcgctcgacgacgcccgcgcgaccgtcgacgtgctgcacggcctgatcgagcgg
gtcggcaaccagggtgtgcacacctacaccgacctgcggtcctacctgcccgatgtgaca
ccggcccagcgcagcaagcggcatctggcgaaggcgctgccgcattgcccaggcgtctat
ctgttccgcggaccgtcggccgaggtactgtatgtcgggacggccgtggatctgcgaagg
cgggtcggccagtatttcaacggcgccgatccgcgcacccgcatcaaggagatggcgtct
ctggcgacggccgtcgatcacgtcgagtgcgcacacgacctcgaggccggagtgcgcgaa
ctgcgactgctcgccgcgcatgcaccgccgtacaaccgccgctcgaagtttccccgccgc
tggtggtgggtggcactgacagacgaggcgttcccgcggttttccacagtgcgaacaccg
aagcgcaacaccgcaattgggccatttcgggcacgcgccgacgccgttgagaccgccgcg
ctgctggcccggttcaccggcgtacgcacctgcaccacccgccttggccgcttttcgctg
catgcgtgtcccgagcgtgagctctcgccatgccccgcgccgcagggcatcaccggaacc
gaatacgccgccgcgcccgcccgtgccgtcgagctgatcgaaggcggcgacagccgtgcg
ctggatgcggtactcgcgcacatcgccgacctggccgagcgcaaccgctatgaaactgcc
gcccgcatgcgcgaccacgccgccgcggccatcgacgtgctgtggcgcggccaacggctg
cgggcgctggccgcagtcgacgaattggtcgccgcccgcccggacggcgacggcggctgg
cacctcgccgtgatccggtacggccagctggccgcggccggcaacgccagtcgcggtgtg
ccacccatgccggttatcaacgccatttgcgttggcgcacaagcggttctgccgacgacg
gccccgcttggcggtgcgcttgtcgaggagaccgcgctgattacgcgctggcttgcccag
cccggcgtgcgcatcgtgcgcgccgaaccaggatgggcatcaccggtcgcggcggcggga
cgcttggcgcagtgggcggcaacggccagatccgcccgcgcggcggccgaacagaagctg
ggttcagaccttttgagtgaaccccacccaacgcgcgagcagcttttcggccgccccgga
gtcgatcgcctcggcggcgcgggccagtcccgactcccaggcgggcacccatttggcgtc
gctggctag
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