Mycobacterium sp. JS623: Mycsm_05476
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Entry
Mycsm_05476 CDS
T02423
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Mycsm_05476
09124 Replication and repair
03420 Nucleotide excision repair
Mycsm_05476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msa03021
]
Mycsm_05476
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_05476
Enzymes [BR:
msa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mycsm_05476
Transcription machinery [BR:
msa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Mycsm_05476
DNA repair and recombination proteins [BR:
msa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Mycsm_05476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
AGB25666
UniProt:
L0J5V8
LinkDB
All DBs
Position
5433900..5435549
Genome browser
AA seq
549 aa
AA seq
DB search
MTDGPLIVQSDKTVLLEVDHEQAGAARAAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSFSRYAVPQPLLVDIVDVMARYGRLQLVKHPAHGLTLVSFDRAVLEEVL
RNKKIAPMLGARIDDDTVIVHNSERGRVKQMLLKIGWPAEDLAGYVDGEKHPISLDQENW
HLRDYQEMAADSFWEGGSGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKRE
LINRTSLTEEEIGEYSGEKKEIRPVTIATYQVITRRTKGEYRHLELFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECIEVRVTMTDNERMLYAVAEPDERYKLCSTVHTKIAVVKSILDKHQGEQTLVIGAYLD
QLDELGQELNAPVIQGSTKTAEREALFDAFRRGEISTLVVSKVANFSIDLPEASVAVQVS
GTFGSRQEEAQRLGRLLRPKHDGGGAMFYSVVSRDSLDAEYAAHRQRFLAEQGYGYVIKD
ADDLLGPAI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggccccctgatcgtgcagtccgacaagacggtgctgctcgaagtcgaccat
gagcaggccggcgcggcgcgcgccgcgatcgctccgttcgccgagctggagcgcgcgccc
gagcacgttcacacctaccggatcactccgctggcgctgtggaacgcacgcgcggcgggc
cacgacgccgagcaggtggtcgacgcgctggtgagcttctcccgctacgcggtgccgcag
ccgctgctggtcgacatcgtcgacgtgatggcccgctacgggcgcctgcagctggtgaag
cacccggcgcacggcctgacgttggtcagcttcgatcgcgcggtgctcgaagaggtgctc
cgcaacaagaagatcgcgccgatgctgggtgcgcgcatcgacgacgacaccgtcatcgtg
cacaacagcgagcgcggccgcgtcaagcagatgctgctcaaaatcggttggcccgcagaa
gatttggctgggtacgttgacggtgaaaagcacccgatctcccttgatcaggagaactgg
cacctgcgcgactaccaggagatggccgcggactcgttctgggagggcggctctggcgtg
gtggtgttgccgtgcggtgcgggcaagacgctcgtcggcgcggcagcgatggccaaggcc
ggcgcgaccacgctgatcctggtgaccaacaccgtcgccggcaggcagtggaagcgcgag
ctgatcaaccggacgtcgctgaccgaggaggagatcggcgagtactcgggggagaagaag
gagatccggcccgtcacgattgcgacgtaccaggtgatcacccgccgcaccaagggcgag
taccgccacctcgagctgttcgacagccgcgactggggcctgatcatctacgacgaggtg
cacctgctgcccgcaccggtgttccggatgacagcggacctgcagtcgcgccggcgtctc
gggttgaccgccacgctgatccgcgaggacggccgcgagggcgacgtgttctcgctcatt
ggccccaagcgctatgacgcgccctggaaagacatcgaggcccagggctggatcgcgccc
gccgaatgcatcgaagtccgcgtgacgatgaccgacaacgagcgcatgctctatgccgtc
gccgaacccgacgagcgctacaagctgtgctccacggtgcacaccaagatcgcggtggtg
aagtcgatcctggacaaacaccaaggcgaacagacgttggtgatcggcgcgtacctcgac
cagctcgacgagttgggccaggaactcaacgccccggtgattcagggctcgacgaagacc
gccgaacgcgaggccttgttcgacgcgttccgccgcggcgagatctccaccctggtggtg
tcgaaggtggcgaacttctccattgacttgccggaagcgtctgtggcagtgcaggtttcg
ggcaccttcgggtccaggcaggaggaggcgcagcggttgggacggctgctgcgtcctaaa
cacgacggcggcggcgcgatgttctattcagtggtgtcgcgcgacagcctcgacgcggag
tatgccgcgcaccggcagcggttcctggccgagcagggctacggctacgtcatcaaggac
gccgacgatctattgggtccggcgatatga
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