Mycobacterium sp. JS623: Mycsm_05958
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Entry
Mycsm_05958 CDS
T02423
Name
(GenBank) DNA topoisomerase I, bacterial
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msa
Mycobacterium sp. JS623
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msa03032
]
Mycsm_05958
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_05958
Enzymes [BR:
msa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Mycsm_05958
DNA replication proteins [BR:
msa03032
]
Prokaryotic type
DNA Topoisomerases
Mycsm_05958
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Mycsm_05958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Rep_1B
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AGB26124
UniProt:
L0J492
LinkDB
All DBs
Position
complement(5928624..5931419)
Genome browser
AA seq
931 aa
AA seq
DB search
MADTDHSSGRNGSVRRLVIVESPTKARKIASYLGSNYIVESSRGHIRDLPRNAADVPAKY
KSEPWARLGVDVDHNFEPLYIISPEKKSTVAELKDLLKEVDELYLATDGDREGEAIAWHL
LETLKPRIPVKRMVFHEITEPAIRAAAEDPRDLDNDLVDAQETRRILDRLYGYEVSPVLW
KKVAPKLSAGRVQSVATRIIVSRERERMAFRSAGYWDVTAELDASVSDPQAQPPTFTAKL
NSVDGRRVATGRDFDSLGGLRKPDEVLVLTETTAGALATGLRGAQLAVSSVEQKPYTRRP
YAPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSESAITAARNQAR
QLYGEEYVHPTPRQYTRKVKNAQEAHEAIRPAGDVFSTPGQLHSQLDTDEFRLYELIWQR
TVASQMADARGTTLSLRISGAASTGEQVVFNASGRTITFAGFLKAYVESIDDQAGGEADD
AESRLPNLEQGQRVDAKELTADGHTTSPPARYTEASLIKALEDLGIGRPSTYSSIIKTIQ
DRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYGFTAAMEDELDEIASGNEQRTNWLS
NFYFGGEHGVQDSIARSGGLKKLVGVNLEGIDAREVNSIKLFDDEEGRPIYVRVGKNGAY
LERMVAGEDGELKPQRANLKDELTPDELTLELAEKLFATPQEGRSLGIDPQTGHEIVAKD
GRYGPYVTEVLPEPESGDDGDAGATAKKGKKPTGPKPRTGSLLRSMDLETVTLEDALRLL
SLPRVVGVDPNTNEEITAQNGRYGPYLKRGTDSRSLATEEQMFDITLDEALKIYAEPKRR
GGQRAATPPLRELGNDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVLSITDERAAEL
LADRRARGPVKRTKKAAAKKKAPAKKAAKKS
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacaccgaccacagcagcggccgcaacgggagcgtgcggcggctcgtcatagtc
gagtcgcctactaaggcacgcaaaattgctagctacctgggctccaactacatcgtcgag
tcgtcgcggggacacatccgcgacctgccgcgaaacgccgccgacgtgccagccaagtac
aagtccgagccgtgggcgcgactcggcgtggacgtcgaccacaacttcgaaccgctctac
atcatcagcccagaaaagaagagcaccgtcgccgagctgaaagacctgctcaaagaggtc
gacgagctctacctcgcgacggacggcgaccgtgagggcgaggccatcgcctggcatcta
ctggagacgctgaagccgcgcataccggtgaagcggatggtgttccacgagatcaccgag
ccggcgatccgggccgccgcagaagacccgcgcgacctggacaacgacctggtcgatgcg
caggagacccgtcgcattctggaccggctctacggctacgaggtcagccccgtgctgtgg
aagaaggtcgcaccgaagctgtccgcaggccgcgtgcagtcggtcgcgacccgcatcatc
gtttcgcgtgagcgtgagcggatggcgttccgcagcgccggctactgggacgtcaccgcc
gaactcgacgccagcgtgtccgatccgcaggcgcagccgccgacgttcacggccaagctg
aactcggtcgacggcaggcgggtggccaccggccgcgacttcgactcgcttggtgggcta
cgcaagcccgacgaggtgctggtgctcaccgaaaccaccgcgggcgcccttgccaccggg
ctgcgcggggcgcagctggcggtgtcctcggtggagcagaagccgtacacccgcaggccg
tacgcgccgttcatgacgtcgacgctgcagcaggaggccggccgcaagctccggttctct
tcggagcgcaccatgagcatcgcgcagcggctctacgagaacggctacatcacttatatg
cgtaccgactccacgacgctgtcggagtcggccatcaccgccgctcgcaatcaggcccgc
cagctttacggcgaggagtacgtgcacccgacaccgcgtcagtacacccgcaaggtgaag
aacgcgcaggaagcacatgaggcgatccggcccgccggtgacgtgttctccacgccgggg
cagctgcacagtcagctcgacaccgacgagttccgcctctacgagctgatctggcagcgc
accgtcgcctcgcagatggctgacgcccggggtacgacgctgtcgttgcggatctccgga
gccgcgtccacgggtgagcaggtcgtgttcaacgcgagcggccgcaccatcacgttcgcc
ggtttcctgaaggcctatgtcgagagcatcgacgaccaggccggcggcgaggccgacgac
gccgagagccggctgcccaacctcgagcagggccagcgcgtcgacgccaaggagctgacc
gccgacggccacaccacgtcgccgcccgcgcgctacaccgaggcgtcactgatcaaggcg
ctggaagatctcggcatcggcaggccctcgacgtactcgtcgatcatcaagaccattcag
gaccgtggttatgtccacaagaagggcagcgcgctggtgccgtcgtgggtggcgttcgcg
gtgacgggcctgctggagcaacatttcggtcggctggttgactacggcttcaccgcggca
atggaagacgagctcgacgagatcgcctctggcaacgaacaacgcaccaattggctgtcg
aacttctacttcggtggcgagcacggggtgcaggactcgatagcgcgttcgggtggactg
aaaaagcttgtcggagtgaatctcgagggcatcgacgcgcgagaagtcaactccatcaag
ctgtttgacgatgaagaaggccggcccatctacgtgcgggtcggcaagaacggcgcgtac
ctcgagcgcatggtcgcaggcgaagacggcgagctcaagccgcaacgggccaacctcaag
gatgagctgacgcccgacgagctcacccttgagttggccgaaaagctattcgccacaccg
caagagggtcgctcgttgggtattgacccgcagaccggacacgagatcgtggccaaggac
gggcgctacggcccctatgtcaccgaggtcttgcccgagcctgagtcgggtgacgacggc
gacgccggcgcgacggcgaagaagggcaagaaaccgacgggtcccaaaccgcgcaccggt
tcgctgctgcggtcgatggatctggaaaccgtgacactcgaggacgcgctgcggctgctg
tcgctgccgcgggtggttggcgtcgatcccaacaccaacgaggagatcaccgcgcagaac
ggccggtacggcccatacctgaagcgcggcaccgactctcgctcgttggccaccgaggag
cagatgttcgacatcaccctcgacgaggcgctgaagatctatgcggagcccaaacgccgt
ggtggacaacgcgcggcgaccccgccgctgcgtgagctcggcaacgacccggccagcggc
aagccgatggttatcaaggacggccgcttcgggccgtacgtcaccgacggtgagaccaac
gccagcctgcgcaaaggcgacgacgtgctgtcgatcaccgatgagcgcgcggccgagctg
ctggccgaccgccgtgcgcgcggtcccgtcaagcggacgaagaaggcggcggccaagaag
aaggcgcccgccaagaaggccgcgaagaagagctag
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