Marivirga salinarum: QYS49_05930
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Entry
QYS49_05930 CDS
T10279
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msaa Marivirga salinarum
Pathway
msaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYS49_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msaa03019
]
QYS49_05930
Enzymes [BR:
msaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QYS49_05930
Messenger RNA biogenesis [BR:
msaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QYS49_05930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
ERCC3_RAD25_C
AAA_22
HEM4
Phage_integrase
Utp25_C
Cas3-like_C_2
DUF1634
Sacchrp_dh_NADP
DUF1904
Motif
Other DBs
NCBI-ProteinID:
WKK76807
UniProt:
A0AA49GCS8
LinkDB
All DBs
Position
complement(674588..675829)
Genome browser
AA seq
413 aa
AA seq
DB search
MRFEELNIIAPILKALKEENYTEPTSIQEQAIPLLLDKNDIMASAQTGTGKTAAFAIPIL
QHLENEKSNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIKNTVIFGGVNQNKQTAAIR
NGVDVLIATPGRLLDLMNQGFINLKDIQYFVLDEADRMLDMGFIHDIRKVIAVLPPKRQS
LFFSATMPDTIVELSRKILNNPKKIAVTPVSSTAQTIQQYLYYTNKSTKKDLLLHILKDP
KMDQVLLFDRTKHGADRIVKELKKQNITAAAIHGDKAQNQRQKALNQFKDKEIRVLVATD
IAARGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSISLCEPEENDYLKDIEKL
INQKIPVVKDSPYPQTDSPMTNAEKKEFEKEKQRRKQEFFANRKKNGNRGGRR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgcgattcgaagaactgaatattattgcgcccattttaaaagcgctaaaagaagaaaat
tatacagaacctacttctattcaagaacaagctattccacttttgttagataaaaatgac
atcatggcgagtgctcaaacaggaacaggaaaaacggcagcttttgcaattcctattcta
cagcatcttgaaaatgaaaaatcaaattcaaagaaaatcaaatcattaatattgacccca
acccgtgaattagccattcaaataggggagagttttaccacttatgggaaatatacttct
atcaaaaataccgtgatttttggtggggtaaatcaaaacaaacaaactgctgccatcaga
aatggagtggatgtattgattgcaactcctggtagattacttgatttaatgaatcaaggc
tttattaacctaaaagacattcaatatttcgttttagatgaagccgatagaatgttggat
atgggtttcattcatgatatccgaaaagtcattgcagtattaccgccaaaaagacaatca
ctatttttctcagccaccatgcctgacacaatagtggagctttcaagaaagatattgaat
aatcctaaaaagattgccgttactccagtttcatctacggcacaaaccattcagcaatac
ttatattacaccaataaatccactaagaaagatttattattgcatattttaaaagatcca
aaaatggatcaggttttactttttgatagaaccaaacatggtgcagaccgaatagttaaa
gaactgaaaaaacaaaatattacggctgctgccattcacggtgataaagcacaaaatcaa
agacaaaaagcactcaatcaatttaaagataaggaaattcgagttttggtagcgactgat
attgctgcccgtggaattgacattgataaattgcaatatgtaatcaattttgatatcccg
aatgttgcggaaacttatgtacatagaattggtcgatcaggtagagcaggtgaggctggc
gtttctatttcgctgtgtgaaccagaagaaaacgattatctgaaggatattgaaaagctg
atcaatcagaaaatcccggttgtgaaagatagtccatatccacaaacggacagtcctatg
accaatgccgagaagaaagaatttgaaaaagaaaagcaacgcagaaaacaagaatttttt
gcgaacagaaagaaaaacggtaatagaggaggaagaaggtaa
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