Marivirga salinarum: QYS49_26315
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Entry
QYS49_26315 CDS
T10279
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
msaa Marivirga salinarum
Pathway
msaa02020
Two-component system
msaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msaa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QYS49_26315 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QYS49_26315 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msaa03021
]
QYS49_26315 (rpoN)
Transcription machinery [BR:
msaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QYS49_26315 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_12
SF3b1
MarR
LacI
DNA_pol_phi
Motif
Other DBs
NCBI-ProteinID:
WMN10657
UniProt:
A0AA51N8C7
LinkDB
All DBs
Position
2278949..2280382
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AA seq
477 aa
AA seq
DB search
MQKLVLSQSLGQRLSPQQIQFIKLLQVPTAELDTRIEEELEINPALEEGKEEPEEDNYEE
DYEEDATDDDFDIEDYLHDDEAGYKMQGDGNSQEEEKEMPIAMGTTLNDQLMTQLGFLGL
DKHQYKIGKQLIGSIESDGYIRREINAIVNDLAFSQNVNTDEDEIESVLTKIQDFDPAGI
AARNLEECLLLQLERKLDQSEAVKLAYQIIDECFEEFSKKHYEKIVKKLNIEDESLFKDA
IDTIKRLNPKPGGSGSGAVKTQFLMPDFILTNQNGEMVITLNSRNAPDLRVSPSYSEMLK
AYDKGDKKDKKLKETVGFVKQKLDAAKWFIDAIKQRQFTLLNTMQAILEYQYEFFREGDE
SKLRPMILKDIAEKIDMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATESGEDVSSRE
VKNTLRGFIDKEDKSKPLSDDKLEKLLKEKGYKIARRTVAKYREQLNIPVARLRKEL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaattagtactctcacaatcattaggacaaaggttgtctcctcagcaaattcag
tttataaaactgttacaagtgcctactgctgagttagatactagaattgaagaagaattg
gaaataaatccggctctggaagaaggaaaagaagagccagaagaggataattatgaagag
gattatgaggaagatgcaaccgatgatgattttgatatagaagattacctccatgatgat
gaagccggctataaaatgcagggtgatggaaacagtcaggaggaagaaaaggagatgcca
attgccatgggcactactttgaatgaccaattgatgactcaattgggttttctaggcttg
gataagcatcaatataaaataggaaaacaattaatcggaagtattgaaagtgatggctat
atccgtagagaaattaatgctattgtcaatgacttggcattttcacaaaatgtaaacacc
gatgaagatgagattgaaagtgtattgaccaaaattcaggattttgatccagccggaata
gcagctcgcaatttagaggaatgtcttttactgcagttagaaagaaaactagaccaatca
gaagctgtaaaattagcttatcaaattattgatgaatgttttgaggagttttctaaaaag
cattatgaaaaaatagtgaagaaactcaatattgaggatgagtcattatttaaagatgcc
atcgatactattaagcgcttaaatcctaaaccgggtggctctggctcgggcgctgtaaaa
acacaatttttaatgcctgattttattctgactaatcagaatggagaaatggttatcacc
ttaaattcaagaaatgcaccagatttaagggtaagtccatcttattctgagatgttgaaa
gcctatgataagggcgataaaaaggataaaaaattaaaagagactgtaggttttgtaaag
caaaaactagatgctgcaaaatggtttattgatgctatcaaacagcgtcaatttacactt
ttgaacactatgcaggcaattttagaatatcaatatgaattttttagagaaggagacgaa
agcaaattgcgtccgatgattttaaaggatattgctgaaaagattgatatggatatttct
actgtttcaagagtggcgaatagcaaatctgttcaaacagaatttggaatttatcctttg
aaatatttcttttcagaaggtatagctacggaatcaggagaagatgtaagctcaagagaa
gtgaaaaatacgttaagaggctttattgataaggaggataaaagtaaaccgctatcagat
gataaattagaaaaactattgaaggaaaaaggctataaaattgcccgaagaactgttgcc
aagtatagagaacagttgaatatcccagttgcacgtttaagaaaagagttatag
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