Mucilaginibacter sabulilitoris: SNE25_04800
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Entry
SNE25_04800 CDS
T09599
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msab
Mucilaginibacter sabulilitoris
Brite
KEGG Orthology (KO) [BR:
msab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msab03016
]
SNE25_04800
Enzymes [BR:
msab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SNE25_04800
Transfer RNA biogenesis [BR:
msab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SNE25_04800
Prokaryotic type
tRNA splicing ligases
SNE25_04800
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPU94837
UniProt:
A0ABZ0TQX3
LinkDB
All DBs
Position
complement(1076277..1077731)
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AA seq
484 aa
AA seq
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MEKEKIGNNELKALGINDVEVLVNFSRVANGLLKHNVMGKAEILANLEAVIDDPMPYALK
KGGKFKNLAEDVIALRKEGKFIKQERSNFKLKEEIANFPVWGLENIEVGALAQMRTAVQL
PIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVDIACRMCLSIFDIPAEAIDTET
DKLKNILVDNTYFGIGCTTKSYFDSSLFDSKTWGETKVIRSLKDKAYAQLGTSGTGNHFV
EWGELTLTGGALNDIPAGKYLALLSHSGSRGFGGTVADHYSRIAMTKTKLPAEAKHLAWL
DLDKDEGQEYWIAMNLAGEYASANHHEIHNKIARALGVKPISMIENHHNFAWKEQLADGT
EVMVHRKGATPAGEGVLGIIPGSMSTPGFLVRGKGDAASINSASHGAGRAMSRSAAFKTL
DKAAIAANLIDKRITLMGSDVDEAPMAYKDIHTVMAAQNDLVEVLAKFEPRIVRMADARE
KPED
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggaaaaaataggcaataatgaattgaaagccttgggtattaatgatgtggaa
gtattggtaaactttagtcgtgtggctaatggtttgcttaaacacaacgttatgggtaaa
gccgagatactggccaatttggaagctgtaattgacgaccctatgccttacgccttaaaa
aagggaggcaagtttaaaaacctggccgaagatgtaatcgcattacgtaaagaaggcaaa
tttataaagcaggaacgcagcaattttaagctgaaagaagagatagccaacttcccggtg
tggggattagagaatattgaggtgggtgctttagcacagatgcgtaccgcagtgcaattg
cccatagctgttgccggtgctttaatgcccgatgcgcaccagggttatggcttacctatt
ggtggcgtattggcgaccaccgcaaatacgattattccgtttgctgtcggggttgatatt
gcctgccgtatgtgcttaagtatttttgatatacctgccgaggccattgataccgaaacc
gacaaactgaaaaatatactggttgataatacctactttggtataggttgtactaccaag
tcgtattttgatagctcgttatttgatagcaaaacctggggcgaaaccaaggtgatccgc
tcgttgaaagataaagcttatgcccaattaggaaccagcggtaccggcaaccactttgtg
gaatggggcgaattgactttaaccggaggtgctttaaacgatattcctgccggtaaatat
ctggccttgctgtctcactccggctcacgtggttttgggggtactgtggccgaccattac
agccgtatagccatgaccaaaaccaagctccctgccgaggccaaacatttggcctggtta
gatctggataaggacgagggacaggaatactggattgccatgaacctggccggcgaatat
gcgagtgctaaccaccacgagatccataataaaattgcccgtgcccttggtgttaagcct
atcagcatgattgagaaccatcataactttgcctggaaagaacaactggccgacggtacc
gaagttatggtacaccgtaaaggtgccaccccggccggcgaaggcgtgttgggcattatt
cccggcagtatgagtacgcccggctttttagtccgtggtaaaggcgatgcggcaagcatt
aattcggccagtcatggtgcgggtagggctatgagccgtagcgcagcctttaaaacatta
gacaaagccgctattgccgccaacttaatcgataaacgcataaccctgatgggtagcgac
gtggacgaagcgccaatggcctacaaagacattcataccgtgatggccgcgcaaaacgat
ctggtagaggtattggccaagtttgaaccgagaatagtaaggatggcggatgcgagggag
aagccggaggattga
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