Micromonospora sagamiensis: GCM10017556_11530
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Entry
GCM10017556_11530 CDS
T06946
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017556_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_11530
03009 Ribosome biogenesis [BR:
msag03009
]
GCM10017556_11530
Enzymes [BR:
msag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM10017556_11530
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017556_11530
Ribosome biogenesis [BR:
msag03009
]
Prokaryotic type
rRNA processing factors
GCM10017556_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
FakA-like_C
Motif
Other DBs
NCBI-ProteinID:
BCL13414
LinkDB
All DBs
Position
complement(1373552..1376533)
Genome browser
AA seq
993 aa
AA seq
DB search
MLENEPEGGERTGTQPAGETAETTETPAVAPTRRRTTRRRAAPLNQPEQTEAPVDAAAGT
ASTSPEAPQAEVLAPVAGDLEAAPKTTRRRRKATSPKAAEEPVVATEVTDAGAEVVPPVK
VTRTRRRKAAESPATEVVPPLPAEPAAAPTAEDVPPVVNQPVAESVPAVAARTDAEPAAD
VAEEDVDTAVPTSSGAENRSGEVPPGVAVSAPAEPPAEPVAEKPTRRRRAIPPVVLFMAP
EPEAVPVRVTPPAEEPAAEEAVETPRRRRRGRRDVEPVEVEVEAEEEPTAEVEDETAEDE
DEDDETAAGRRRRRRGRRGRGRGRGGADEADDDEEAEESAQAEEEAEADAEAEAETDEEE
DDSADGLTRRRRRRRRRGAGDVESTADDGVPTVVKIREPRKTVDEVQGVSGSTRLEAKRQ
RRRDGREQRRTRPPILSESEFLARREAVDRVMVVRQRGDRTQIGVLEDGVLVEHYVTRNS
SGTMAGNVYLGKVQNVLPSMEAAFVDVGRGRNAVLYAGEVNWDTTGLEGRARSIEQALRS
GDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDVLKK
LVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIRAKAAEGGAPVLLYEEPDLVIRVV
RDLFNEDFRELVIEGDGAYDVVESYLSHVSPDLVERLRRHTGTADVFATYRIDEQILKGL
DRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRD
IGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLE
AFSETCECCKGRGLIIHTEPVPEKPRAGGAPEKTKAVAATAPATPAPAEQNGASTRRRGR
KSATPERSTVEVEVTETPTDTYQDTMGYDLSRYEVDTEAAPAVADAQRGESARLAAADDP
DALGDGEGDDELAEAGGGRRRSRRGGARRRTRP
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgagcggaccggcacacagccggccggtgagacc
gccgagaccaccgagacccccgccgtcgcgccgacgcgacggcggaccacccggcgccgg
gccgcgccgctcaaccagccggaacagaccgaggcacccgtcgacgcggccgccggcacc
gcctcgaccagccccgaggcaccccaggccgaggtgctcgccccggtcgccggtgacctg
gaagcggccccgaagaccacccgtcgccgccgcaaggcgaccagcccgaaggctgccgag
gagccggtcgtcgccaccgaggtgacggatgccggcgcggaggtcgtaccgccggtcaag
gtgacccggacgcggcgccggaaggcggccgagagcccggccaccgaggtcgtccccccg
ctgccggccgagccggccgccgccccgacggcggaggacgtgccgccggtggtgaaccag
ccggtcgcggagagcgtgccggccgtggccgcgcggacggacgcggagccggcggcggat
gtcgccgaggaggacgtcgacacggccgtcccgacgtccagcggtgcggagaaccggtcc
ggtgaggtcccgccgggggtggcggtgtccgccccggccgaaccgccggccgagcccgtg
gcggagaagccgacccgccgtcgccgggccatcccgccggtggtgctcttcatggccccg
gagcccgaggcggtgcccgtccgggtgacgccgccggccgaggagcccgccgccgaggag
gcggtcgagaccccgcgccgccgtcgccgtggtcgacgcgacgtcgaaccggtcgaggtc
gaggtcgaagccgaggaggagcccaccgccgaggtcgaggacgagaccgccgaggacgag
gacgaggacgacgagaccgccgcagggcggcgccgtcgccgtcgcggccgtcggggtcgg
ggtcggggccggggcggggccgacgaggccgacgacgacgaggaagccgaggagtcggcg
caggccgaggaggaggccgaggccgacgccgaggccgaggccgagaccgacgaggaggag
gacgacagcgccgacgggctgacccgtcgtcgccgtcgtcgccgtcgtcgtggcgcgggt
gacgtcgagtcgaccgcggacgacggcgtcccgacggtggtcaagatccgtgagccgcgc
aagaccgtcgacgaggtgcagggcgtctccggttcgacccggctggaggcgaagcggcag
cgccgccgcgacggccgggagcagcggcgtacccgaccgccgatcctgagcgagtcggag
ttcctggcccgtcgggaggcggtcgaccgggtgatggtggtccgccagcgcggtgaccgc
acccagatcggcgtgctggaggacggcgtcctggtcgagcactacgtcacccgcaactcc
tccggcaccatggccggcaacgtctacctgggcaaggtgcagaacgtcctgcccagcatg
gaggcggccttcgtcgacgtcgggcgcggccgaaacgcggtcctgtacgccggtgaggtc
aactgggacaccaccggcctggaggggcgggcgcgctcgatcgagcaggcgctcaggtcc
ggcgactcggtgctggtgcaggtcaccaaggacccgatcggccacaagggcgcccggctg
accagccacatcgcgctctccggccggcacctggtctatgtgccgaacggcaacgcctcc
ggcatcagccggaagctgccggacaccgagcgcaagcggctgcgggacgtgctgaagaag
ctggtaccggacggcgcgggcgtgatcgtccgaaccgccgccgagggggccagcgaggac
gaactcgcccgggacgtcaagcggctccaggcgcagtgggaggacatccgggccaaggcg
gcggagggcggcgccccggtgctgctctacgaggagcccgacctggtcatccgggtggtg
cgggacctgttcaacgaggacttccgcgagctggtgatcgagggcgacggggcgtacgac
gtggtcgagtcgtacctgtcgcacgtgtcgccggacctggtcgagcggctgcgccggcac
accggcaccgccgacgtcttcgccacgtaccgcatcgacgagcagatcctcaaggggctg
gaccggaaggtcttcctcccctccggcggtcacctggtcatcgaccgcaccgaggcgatg
accgtggtggacgtcaacaccggcaagtacaccggtgccggcggcaacctggaggagacc
gtcacccgcaacaacctggaggcggccgaggagatcgtccgccagctccggctgcgggac
atcggcggcatcgtcgtcatcgacttcatcgacatggtgctcgagtcgaaccgggagctg
gtgctgcgccgcctcaccgagtgcctcggccgggaccgcaccaagcaccaggtcaccgag
atcacctcgctcggcctggtgcagatgacccggaagcggatcggcgcggggctgctggag
gcgttcagcgagacctgcgagtgctgcaagggccggggcctgatcatccacaccgaaccg
gtgccggagaagccgcgtgccggtggcgcgccggagaagaccaaggcggtcgcggcgacg
gccccggccaccccggcgccggccgagcagaacggcgcgtcgacgcgtcggcgggggcgc
aagtcggccacaccggagcggagcaccgtcgaggtcgaggtcaccgaaaccccgaccgac
acgtaccaggacacgatgggctacgacctgtcccggtacgaggtcgacacggaggccgcc
ccggcggtggccgacgcccagcgcggcgagtcggcccggctcgccgccgccgacgacccg
gacgccctgggcgacggggagggtgacgacgaactcgccgaggcgggcggcggtcgtcgc
cggtcccggcggggtggcgcgcgacggcgtacccggccgtga
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