Micromonospora sagamiensis: GCM10017556_13970
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Entry
GCM10017556_13970 CDS
T06946
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
msag
Micromonospora sagamiensis
Pathway
msag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017556_13970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msag03021
]
GCM10017556_13970
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_13970
Transcription machinery [BR:
msag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GCM10017556_13970
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GCM10017556_13970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
Collagen
NACHT
VWA_2
Motif
Other DBs
NCBI-ProteinID:
BCL13658
LinkDB
All DBs
Position
complement(1655103..1657211)
Genome browser
AA seq
702 aa
AA seq
DB search
MSDTTDVTSDVSNVAGEATAAAPARRRRSGTGLSAMLLPELQSLAASLGISGTARMRKVE
LISAITERQGGAAAGAPRPRAEVAAAAAAPVREEVRADVRETAEPATAPTEAESRPRSRR
SRAATTAERAAATAAAAPVTTEAEPRGAVTPETAERPERGERAERGDRAAERGERTERGE
RTERNDRADRGDRTERGERTERGERGERADRGDRTERGERTERGDRTERGERTERGERNE
RTERSDRNERTERGERADRNERGDRTERGQRGDRDRDTDVDDDGEGGGRRGRRSRFRDRR
RGRGERNETGGDVVASGGREPQVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVS
MSQVKKYGLRRGDAITGAVRAARDGEQRRDKYNPLVRLDSVNGMEPDEARRRPEFYKLTP
LYPQERLRLETEPHILTTRVIDLVTPIGKGQRALIMSPPKAGKTMVLQAIANAITHNNPE
CHLMVVLIDERPEEVTDMQRSVKGEVVAATFDRPPQDHTTVAELAIERAKRLVELGHDVV
VLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALV
ETGSVMDTVIFEEFKGTGNAELKLDRKIADKRVFPAIDIHTSGTRKEEILLAPEELAITH
KLRKVLHSLDSQAALDLLLDRLKQSRTNIEFLMQIAKSTPGE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgacgtgacgtcggatgtttccaacgtcgctggcgaagccaccgcc
gccgcccctgcccgtcgtcggcgcagcggcaccggtctgtcagcgatgctgctgccggag
ctgcagagcctggccgcgtcgctcggcatctccggcactgcacgcatgcgcaaggttgag
ctgatcagcgccatcaccgagcggcagggcggtgccgccgccggggcccctcgaccgcgt
gccgaggtggcggccgcagccgccgcgcccgtccgcgaggaggtccgggcggacgtgcgg
gagaccgcggagccggcgaccgctccgaccgaggccgagtcccggccacggagccggcgc
agccgggccgcgaccaccgccgagcgcgccgccgcgaccgctgccgccgccccggtcacc
accgaggcggagccgcgcggggccgtcaccccggagaccgccgagcgccccgagcggggc
gagcgggcggagcgtggtgaccgcgccgccgagcgcggtgagcggaccgagcgcggtgag
cgaaccgagcgcaacgaccgggccgaccgcggtgaccggaccgagcgcggtgagcggacc
gagcgcggtgagcgcggtgagcgggccgaccgcggtgaccgcactgagcgtggcgagcgg
accgagcgcggtgaccgcactgagcgtggcgagcggaccgagcgcggtgagcgcaacgag
cggaccgagcggagcgaccgcaacgagcgcacggagcgcggcgagcgggccgaccgtaac
gagcgcggcgaccggaccgaacggggccagcgcggcgaccgggaccgcgacaccgacgtc
gacgacgacggcgagggcggcggccggcgcggccggcgcagccggttccgggaccgtcgc
cggggccgtggcgagcgcaacgagaccggcggggacgtcgtcgccagcggcgggcgcgag
ccccaggtcagcgaggacgacgtgctcgtcccggtggccggcatcatcgacgtgctggac
aactacgccttcgtccggaccaccggctacctggccggcccgaacgacgtgtacgtctcg
atgtcccaggtcaagaagtacggcctgcggcgtggcgacgccatcaccggtgcggtgcgt
gcggcgcgcgacggcgagcagcggcgggacaagtacaacccgctggtccggctggactcg
gtcaacggcatggagccggacgaggcccgccgccgtccggagttctacaagctcaccccg
ctctacccgcaggagcggctgcggctggagaccgagccgcacatcctcaccacccgggtg
atcgacctggtcacgccgatcggcaagggccagcgggcgctgatcatgtcgccgcccaag
gctggtaagaccatggtgttgcaggcgatcgccaacgcgatcacccacaacaacccggag
tgccacctgatggtggtgctgatcgacgagcggcccgaagaggtcaccgacatgcagcgc
tcggtcaagggcgaggttgtcgcggccaccttcgaccgtccgccgcaggaccacaccacc
gtcgccgagctggcgatcgagcgggccaagcgcctggtcgagctggggcacgacgtggtc
gtgctgctcgactcggtgacccggctcggccggtcgtacaacctggcggcgccggccagc
ggccggatcatgtcgggtggtatcgactcgaccgcgctctacccgccgaagcgtttcctc
ggcgcggcgcggaacatcgagaacggcggctcgctgaccatcctcgccaccgccctggtc
gagaccgggtcggtgatggacacggtcatcttcgaggagttcaagggcaccggcaacgcc
gagctgaagctggaccggaagatcgccgacaagcgggtcttcccggccatcgacatccac
acctccggcacccgtaaggaggagatcctgctcgcgccggaggaactggccatcacgcac
aagctccgcaaggtcctgcactcgctggactcgcaggcggcgctggacctgctgctggac
cggctcaagcagtcccggaccaacatcgagttcctgatgcagatcgccaagtcgacgccg
ggcgagtaa
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