Micromonospora sagamiensis: GCM10017556_17820
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Entry
GCM10017556_17820 CDS
T06946
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM10017556_17820 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msag03021
]
GCM10017556_17820 (rpoC)
03400 DNA repair and recombination proteins [BR:
msag03400
]
GCM10017556_17820 (rpoC)
Enzymes [BR:
msag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM10017556_17820 (rpoC)
Transcription machinery [BR:
msag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM10017556_17820 (rpoC)
DNA repair and recombination proteins [BR:
msag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM10017556_17820 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCL14043
LinkDB
All DBs
Position
complement(2117405..2121298)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDAESRHRDLSTIENEILAEKRQAENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAENLREIIRSGKGQRKIRALKRLKVVA
AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMIIGLYHLTHFTPGGKGEGR
AFSSDAEARMAFDNGELHLQSPVRIRLRGITGVDNGAGAEPWVAPEGWVEGEPLIVETTL
GRVLFNETMPVGYRFVNYEVRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVVTPPSKREILARYEKEADRIDKQYQRGLMTGEERRGELIEIWTKATNEVAKN
LENSLPRENPLWKMIHSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKSSYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIGERIDGK
LVVHEHAETGVHARTLADDIKGPDGTIVVERGADLNSILVDKIVAAGVEQVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVTEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIVVPDDGSDEIVYDKISKRVRLRP
GVHDGAHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEII
IRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVSEGGEPAAGRPVLMGITKASLAT
DSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNVRVEPTEE
AKAKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcgcatcggcctcgccaccgccgacgacatc
cgtcagtggtcccacggcgaggtcaagaagcctgagacgatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaaggtgcgtcgtgagcgcatggggcacatcgagctggccgccccg
gtgacccacatctggtacttcaagggcgtgccgagccggctgggctacctgctggacctc
gcccccaaggacctcgagaagatcatctacttcgcctcgtacgtggtgacgagcgtggac
gccgagtcgcgtcaccgtgacctctccaccatcgagaacgagatcctcgccgagaagcgg
caggcggagaacagccgcgactcggagatcgagaagcgcgccgccaagctcgaggccgac
ctggccgagctggaggccgagggtgccaaggcggacgtccggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcccagcgcgagatcgaccgtctggac
gaggtgctcgacaccttccgcaagctggagccgaagcagctggtcaccgacgagctgctc
taccgcgagctgcgggaccggttcggtgagtacttcaccggcggcatgggtgccgaggcg
atcaaggcgctggtccagaacatggacctcgacgccgaggcggagaacctccgcgagatc
atccgctccggcaaggggcagcggaagatccgggcgctcaagcggctcaaggtggtcgcc
gcgttcctgaacacccgcaactcgccgctcggcatggtgctcgactgcgtcccggtgatc
ccgccggacctgcggccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgtcgtggccgtccggtcaccggcccgggtaaccgaccgctgaag
tcgctctccgacatgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgggtcgactactccggccgttccgtcatcgtcgtcggcccgaagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgc
ccggtcgtgtgggacgtgctggaagaggtcatcggcgagcacccggtgctgctcaaccgg
gcgcccaccctgcaccggctgggcatccaggcgttcgagccgcagctggtcgagggcaag
gcgatccagatccacccgctggtctgcaccgccttcaacgccgacttcgacggtgaccag
atggcggtgcacgtgccgctctccgccgaggctcaggccgaggcgcggatcctgatgctc
tcgtcgaacaacatcctcaagccggccgacggcaagccggtgaccatgcccacccaggac
atgatcatcggtctgtaccacctcacccatttcaccccgggtggcaagggcgagggccgg
gcgttcagctcggacgccgaggcgcggatggccttcgacaacggcgagctgcacctccag
tcgccggtgcggatccggctgcgcggcatcaccggtgtcgacaacggcgccggggccgag
ccgtgggtcgcgccggagggctgggtcgagggcgagccgctgatcgtcgagaccaccctc
gggcgggtgctgttcaacgagaccatgccggtcggctaccgcttcgtgaactacgaggtg
cgcaaggggcagctctccgcgatcgtcaacgacctcgccgagcggttcccgaaggtggcc
ctcgcggccaccctggacgggctcaaggaggccggtttccactgggccacctggtccggt
gtgaccatcggcatggaggacgtcgtcaccccgccgagcaagcgggagatcctggcccgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgtggtctcatgaccggtgag
gagcgccgcggcgagctcatcgagatctggaccaaggccaccaacgaggtcgccaagaac
ctggagaactcgctgccccgggagaacccgctgtggaagatgatccactcgggcgcccgc
ggtaacctgctccagctccggcagatcgccgcgatccgtggcctggtggccaacccgaag
ggcgagatcatcccccggccgatcaagtcgagctaccgggagggtctgtccgtactggag
tacttcatctccacgcacggcgcccggaagggcctcgcggacaccgcgctgcggaccgcc
gactcgggttacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcatccgcgag
gaggactgcggcaccgaccgggcgatcccgatgcagatcggcgagcggatcgacggcaag
ctggtggtgcacgagcacgccgagaccggcgtgcacgcccggaccctggccgacgacatc
aaggggccggacggcaccatcgtcgtcgagcggggcgcggacctgaactcgatcctggtc
gacaagatcgtcgcggccggggtggagcaggtccgggtgcgcagcgtgctgacctgtgag
tcgaagctgggcgtctgcggtgcctgctacggccgctcgctgccgaccggcaagaccgtg
gacatcggcgaggccgtcggcatcatcgccgcccagtccatcggtgagccgggtacgcag
ctcacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccgcgtgtcacggagatcttcgaggcccgggtcccgaagggcaaggcgccgatcgccgac
acccccggccggatccggatcgaggacggcgagcgctcgcggaagatcatcgtggtgccg
gacgacggcagcgacgagatcgtctacgacaagatctcgaagcgggtccggctgcgtccg
ggcgtccacgacggggcgcacgtcgaggtcggcgagaagctcaccgagggcaccatcgac
ccgcacgagctgctgcgcatcctcggcccgcgcgcggtccaggtccacctgacccaggag
gtccaggaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatc
atccgccagatgctcaagcgggtgacggtcatcgactccggctcgacggagttcctgccg
ggtgtgctggtcgaccgggcgctgttcgagtcggagaaccgccgactcgtctccgagggc
ggcgagcccgccgccggccgtccggtgctgatgggtatcaccaaggcgtcgctggccacc
gactcgtggctgtcggcggcctccttccaggagaccacccgggtgctgacggacgcggcg
atccacgcccgcagcgactcgctgatcggcctgaaggagaacgtgatcatcggtaagctc
atcccggccggtacgggcatcagcaagtaccgcaacgtccgggtcgagccgaccgaggag
gcgaaggccaaggtctactcgatgaccggctacccggagaccgactacggcttcgggccg
gccagcggccaggcggtgccgctggacgacttcgacttcgggtcgtaccgctaa
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