Micromonospora sagamiensis: GCM10017556_40560
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Entry
GCM10017556_40560 CDS
T06946
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017556_40560 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_40560 (rnj)
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017556_40560 (rnj)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCL16317
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Position
4613289..4614977
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AA seq
562 aa
AA seq
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MTEAHIEAELPPPLPEGGLRIIPLGGLGAIGRNMTVFEYDGKLLIVDCGVLFPDVEQPGV
DLILPDFAPILDRLDDVQAIVLTHGHEDHIGAVPYLLAHKQDIPLVGSQFTLGLVEAKLA
ERRIEPYTLTVREGGRERLGPFECEFFAVNHSIPDALAVAIRTPAGLVLHTGDFKMDQLP
LDGRITDLAGFARLGAEGVDLLLSDSTNAEIPGFVTPEREIGPVLDSIFAKAKGRIIVAS
FASHVHRVQQVLDSAAEHDRKVALIGRSMVRNMGIARDLGLLNIPPGLVVGLDEATSLPP
ERIVLMSTGSQGEPMSALGRMASGDHRHITIAPGDTVVLASSLVPGNETSVYRVINRLAR
AGAVVVHKDVAKVHVSGHAPAGELLYLLNVVRPSNLMPVHGEWRHLRAHARLGIESGVDP
DRVVLCEDGDVVDLVDGRASLVGHVTSRYVYVDGLAVGDVGESLLTERRILGDGGFIACT
VVVDSVTGKVVGGPTVSAKGFSEDPAAFNAVVPLVTEALNRAASDGITDPHQLQQIVRRT
VGRWVNDAYRRRPMIVPFVVEV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaggcgcacatcgaggcggaacttcccccgccgcttccggagggtggtctacgg
atcatcccgcttggcgggctcggcgccatcgggcggaacatgaccgtcttcgagtacgac
ggcaagctgctcatcgtcgactgcggcgtgctcttccccgacgtggagcagcccggcgtc
gacctgatcctccccgacttcgcccccatcctggaccgactcgacgacgtccaggcgatc
gtgctcacccacgggcacgaggaccacatcggcgcggtgccgtacctgctcgcgcacaag
caggacatcccgctggtcggctcccagttcaccctcggcctggtcgaggcgaagctggcc
gagcggcggatcgagccgtacaccctgaccgtgcgggaggggggccgggaacggctcggc
cccttcgagtgcgagttcttcgcggtgaaccactccatcccggacgcgctcgcggtggcc
atccgcaccccggccgggctggtcctgcacaccggcgacttcaagatggaccaactcccg
ctggacggccggatcaccgacctggccgggttcgcccggctcggcgcggagggcgtggac
ctgctcctgtccgactccaccaacgcggagatccccggtttcgtcacgccggagcgggag
atcggcccggtcctcgactcgatcttcgccaaggcgaagggccggatcatcgtcgcctcg
ttcgcctcgcacgtgcaccgggtgcagcaggtgctcgactcggccgccgagcacgaccgc
aaggtcgccctgatcggccggtccatggtccgcaacatgggcatcgcccgcgacctcggc
ctgctcaacatcccacccggactggtggtcggcctggacgaggcgaccagcctgcccccg
gaacggatcgtgctgatgtccaccggctcgcagggcgagccgatgagcgcgctcggccgg
atggccagcggcgaccaccggcacatcaccatcgcccccggtgacaccgtcgtcctggcc
agctccctggtccccggcaacgagacctcggtgtaccgggtgatcaaccggctcgcccgg
gccggtgcggtggtggtgcacaaggacgtcgccaaggtgcacgtctccggccacgcgccc
gccggtgagctgctctacctgctcaacgtggtccggcccagcaacctgatgccggtgcac
ggcgaatggcggcacctgcgggcgcacgcccggctgggcatcgagtccggcgtcgacccc
gaccgggtggtgctctgcgaggacggcgacgtggtcgacctggtcgacggccgggccagc
ctggtcgggcacgtgaccagccgctacgtctacgtcgacgggctggccgtcggggacgtc
ggcgagtcgctgctgaccgagcggcggatcctcggcgacggcggcttcatcgcctgcacc
gtggtggtcgactcggtcaccggcaaggtggtcggcgggccgaccgtctccgccaagggc
ttctccgaggacccggcggcgttcaacgcggtcgtgccgctggtcaccgaggcgctgaac
cgggccgcctccgacgggatcaccgacccgcaccagctccagcagatcgtccggcggacg
gtcggtcgatgggtcaacgacgcgtaccgtcgtcggccgatgatcgtcccgttcgtggtc
gaggtctga
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