Micromonospora sagamiensis: GCM10017556_40940
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Entry
GCM10017556_40940 CDS
T06946
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017556_40940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_40940
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017556_40940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
DUF6479
Motif
Other DBs
NCBI-ProteinID:
BCL16355
LinkDB
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Position
4661563..4663329
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AA seq
588 aa
AA seq
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MSAVDVVLLGAVVALTLVVVGAVVLGARTLRRVGAAPAPEDPAFVAEKDRQEQSLAALRT
AADEAHSTADVAKSAAAAARAEAAAAKAEANAARDEARRVLEAARLEADTVLERAHKQAE
ADAEQLRAAARRSGEREVAVLASTTREQAAEVERRAARMDERERLHTEEAERLAERERQL
TAASAALAAREAALVEREQALVEAEEQRRRELERIAGLTVEAARAELIEAIETQAKREAA
LLVRDIEADARSTAEQRARHIVVDAIQRVASEQTAESVVSVLHLPGDEMKGRIIGREGRN
IRAFESVTGVNLIIDDTPEAVLLSCFDPVRREVGRLTLEKLVLDGRIHPHRIEEVHDLAR
QEVDELCQRAAEDALVEVGITDIHPELATLLGRLRYRTSYGQNVLKHLVETAHIAGIMAA
ELRLDVPTIKRCAFLHDIGKALTHEVEGSHALIGADLARKYGESEDVVHAIEAHHNEVPP
QTIEAVLTQASDACSGGRPGARRESLEAYVKRLERIEEIAAGKLGVEKVFAMQAGREIRV
MVKPDDVDDIGAAVLARDVAKQIEEELTYPGQIRVTVVRESRVTEIAR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgtcgacgtcgtcctcctcggggcggtcgtggccctgaccctcgtggtggtc
ggcgcggtcgtcctcggtgcccggaccctgcgccgggtcggcgcggcaccggcgcccgag
gatccggccttcgtcgccgagaaggaccgccaggagcagtcactggcggcgctgcgcacc
gccgccgacgaggcgcactcgaccgccgacgtggcgaagtcggcggcggcggctgcgcgg
gccgaggccgcggcggccaaggccgaggcgaacgccgcccgggacgaggcacgccgggtg
ctggaggcggcccggctggaggcggacaccgtcctggagcgggcccacaagcaggccgag
gcggacgccgaacagctgcgggcagcggcccggcgcagcggcgagcgggaggtggccgta
ctcgcctccaccacccgcgagcaggccgccgaggtggagcgccgggcggcccggatggac
gagcgggagcggctgcacaccgaggaggcggagcggctggccgagcgggaacggcagctc
actgccgccagtgccgccctcgcggcccgggaggcggcgctggtcgaacgggagcaggcc
ctcgtcgaggcggaggagcagcggcgccgggaactggagcggatcgccggactcaccgtc
gaggcggcccgcgcggaactcatcgaggcgatcgagacgcaggccaaacgggaggccgcg
ctgctggtccgggacatcgaggcggacgcccgcagcaccgccgaacagcgggcccggcac
atcgtggtggacgcgatccagcgtgtcgccagcgagcagaccgcggagagcgtggtcagc
gtcctgcacctgcccggtgacgagatgaaggggcggatcatcggccgggagggccgcaac
atccgtgcgttcgagtcggtcaccggggtcaacctgatcatcgacgacacccccgaggcg
gtgctgctctcctgcttcgacccggtacgccgggaggtcggccggctcaccctggagaag
ctggtcctggacgggcggatccatccgcaccggatcgaggaggtgcacgacctggcccgg
caggaggtggacgaactctgtcagcgggccgccgaggacgccctggtcgaggtgggcatc
accgacatccacccggaactggccaccctcctcggccggctgcgctatcggacgtcgtac
gggcagaacgtgctcaagcacctggtggagaccgcgcacatcgccgggatcatggccgcc
gagctgcggctggacgtgccgaccatcaagcggtgcgccttcctgcacgacatcggcaag
gcgctcacccacgaggtggagggcagccacgcgctcatcggtgcggatctggcccgtaag
tacggcgagagcgaggacgtcgtccacgccatcgaggcgcaccacaacgaggtgcccccg
cagaccatcgaggcggtgctgacccaggcgtcggacgcctgctcgggcggccgtcccggg
gcccggcgggagagcctggaggcgtacgtcaagcggctggagcggatcgaggagatcgcc
gccggcaagctcggggtggagaaggtcttcgcgatgcaggccggtcgggagatccgggtg
atggtcaagccggacgacgtggacgacatcggtgcggcggtgctggcccgggacgtggcc
aagcagatcgaggaggaactgacctacccggggcagatccgggtcaccgtggtccgcgag
tcccgggtcaccgagatcgcccgctga
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