Micromonospora sagamiensis: GCM10017556_44330
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Entry
GCM10017556_44330 CDS
T06946
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msag
Micromonospora sagamiensis
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_44330
Enzymes [BR:
msag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM10017556_44330
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM10017556_44330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
NACHT
SLFN-g3_helicase
nSTAND3
PhoH
WH3_Lhr
DUF2968
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCL16694
LinkDB
All DBs
Position
complement(5039597..5043703)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQNPPASAAPDAVREPAAALRELHRRVAELMFRDQRRVQRRLDGARRLRDPARRDAALAE
ITADVAGAEARLAARRAAVPRVTYPVGLPVSERKDDIAAAIRDHQVVIVAGETGSGKTTQ
LPKICLELGRGVQGLIGHTQPRRLAARTVADRIAEELGTELGDVVGYKVRFTDQVSDRSL
VKLMTDGILLAELQNDRMLRQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVIITS
ATIETDRFARHFAAPPAEGETEGKPAPVVEVSGRTYPVEVRYRPLVEVTEAEEDEGDEEN
VRDQIQAIGDAVEELAAEGPGDILVFLSGEREIRDTAEALGKLVEKKRSLLGTEILPLYA
RLSSAEQHRVFAPHTGRRVVLATNVAETSLTVPGIKYVVDPGTARISRYSSRLKVQRLPI
EPVSQASANQRKGRCGRTSDGICIRLYDEQDFLSRPEFTDPEILRTNLASVILQMTAIGL
GDIAAFPFIDPPDRRNVTDGVNLLHELGALDVTQTDPAKRLTPLGRRLAQLPVDPRLARM
VVEGERNGCATEVVVIAAALSIQDPRERPAEKQAQADQAHARFTDKESDFVTFLNLWRYL
REQQRALSSSAFRRMCKAEYLNYLRVREWQDIVSQLRQVLRTPEPGAGGRGRRGPAADAA
DGGRRDAAETGGGRRDRGADLPEEIDTPKVHQSLLVGLLSHVGLKDPQKHEYLGARGAKF
ALFPGSALFRKPPRWVMAAELVETSRLWGRVAGRVEPEWVEPLAQHLVKRSYSEPHWEKK
QAAVLAYEKVTLYGVPLVTGRKVNFGRIDPALSRELFIRHALVEGDWSTHHQFYAENQRL
LTDIEELEHRARRRDILVDDETIFAFYDQRIPADVVSGRHFDAWWKKTRRERPDLLTFTR
DLLVNAGRGGVDEADYPDEWHSDGVTLPLTYRFEPGTPTDGVTVDIPLPLLNQVPAETFD
WQVPGLREELVVALIRSLPKVIRRNFVPVPDFARAALAAITPGEEPLLDALTRVLRRMTG
VTVPRDAWELDKLPAHLRVTFRVLDEENKPVAEGKDLPALQRQLKAEVRQVVAAAAPDVA
RTGLREWSVGTLPRTIEQVRAGYRVTAYPALVDEGETVGVRVFDSEAEQAAAMWAGTRRL
LRLTVANPAKFLQGRLSNEAKLALSRNPHGGVQALIADATGAAIDRLVADAGGPAWDADG
FAALREKVRADLVDTVVEVMDRVRKVLAAAHAVQQRLTRTTDLTLVAALADIKAQLAGLV
HAGFVTEAGYARLPDLLRYLTAIERRLDRLPGNPQRDRQQQDRIAVVQKEYQDMLAALPP
TRRDEESVRQIRWMIEELRVNVFAQALGTPYPVSEQRIYRAMDAAEGR
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcctcccgcctccgccgcgcccgacgccgtccgcgagcccgccgccgccctc
cgcgagctgcaccgccgggtcgccgagctgatgttccgcgaccagcgccgcgtccaacgc
cggttggacggggcacgccggctgcgtgaccccgcccgtcgggacgccgcgctggccgag
atcaccgccgacgtggccggtgccgaggcgcggctggccgcccgccgggccgccgtcccg
agggtcacctatccggtgggcctgccggtcagcgagcgcaaggacgacatcgccgccgcg
atccgcgaccaccaggtggtgatcgtggccggcgagaccgggtcgggcaagaccacccag
ctgccgaagatctgcctggagctggggcggggcgtgcaggggctgatcgggcacacccag
ccccggcggctggccgcccgtacggtcgccgaccggatcgccgaggagctgggcaccgag
ctgggcgacgtggtcggctacaaggtgcgcttcaccgaccaggtcagcgaccgctccctg
gtcaagctgatgaccgacggcatcctgctcgccgaactccagaacgaccggatgctgcgc
cagtacgacacgttgatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcatc
ctcgggtacctgcggcagctcctcccccgccggcccgacctgaaggtgatcatcacctcg
gcgaccatcgagaccgaccggttcgcccggcacttcgccgcgccgccggccgagggcgag
accgagggtaagcccgcgccggtggtggaggtctccggacggacgtacccggtggaggtg
cgctaccggccgctggtcgaggtcaccgaggccgaggaggacgagggtgacgaggagaac
gtccgcgaccagatccaggcgatcggcgacgcggtcgaggagctggccgccgaggggccg
ggcgacatcctggtcttcctcagcggcgagcgggagatccgggacaccgccgaggcgctg
ggcaaactggtggagaagaaacggtcgctgctcggcaccgagatcctgccgctgtacgcc
cggctctcctccgccgagcagcaccgggtcttcgccccgcacaccggacgccgggtggtg
ctcgccaccaacgtcgcggagacctcgctgaccgttcccggcatcaagtacgtggtggac
ccgggcaccgcacggatctcccgctactccagccggctcaaggtgcagcggctgccgatc
gagccggtctcccaggcctcggccaaccagcgcaaggggcggtgcgggcggacctccgac
ggcatctgcatccgcctctacgacgagcaggacttcctctcccgtccggagttcaccgac
ccggagatcctccgcaccaacctggcctcggtcatcctccagatgaccgcgatcgggctg
ggcgacatcgcggcgttcccgttcatcgacccgccggaccggcgcaacgtcaccgacggg
gtgaacctgctgcacgagctgggcgcgctcgatgtgacccagaccgacccggcgaagcgg
ctcaccccgctcgggcggcggttggcccagctcccggtggacccccggctggcccggatg
gtggtggagggcgaacgcaacggctgtgccaccgaggtcgtcgtgatcgccgccgcgctc
tccatccaggacccgcgcgaacggccggcggagaagcaggcccaggccgaccaggcgcac
gcccgcttcaccgacaaggagtcggacttcgtcaccttcctgaatctctggcgctacctg
cgggagcagcagcgggcgctctcctccagcgcgttccgccggatgtgcaaggcggagtac
ctcaactacctgcgggtacgcgagtggcaggacatcgtcagccagctgcgccaggtgttg
cgtaccccggaaccgggtgcggggggacgcggtcggcgcgggccggcggcggacgcggcg
gacggcggccggcgcgacgcggcggagaccggcggcggacggcgggaccggggcgcggac
ctgccggaggagatcgacaccccgaaggtgcaccagtccctgctggtcgggttgctctcc
cacgtcgggctgaaggacccgcagaagcacgagtacctcggcgcgcggggagcgaagttc
gccctcttccccggatcggcgctgttccgtaagccgccgcgctgggtgatggccgccgag
ctggtggagacctcccggctctggggccgggtcgccggccgggtcgagccggaatgggtc
gagcccctcgcccagcacctggtcaagcgcagctacagcgagccgcactgggagaagaaa
caggcggcggtgctcgcctacgagaaggtgaccctctacggcgttcctctggtcaccggc
cggaaggtcaacttcggccggatcgatccggcgctgagccgggagctgttcatccggcac
gcgctggtcgagggcgactggtccacccaccaccagttctacgcggagaaccagcggctg
ctcaccgacatcgaggagctggagcaccgggcccgtcgccgggacatcctggtcgacgac
gagaccatcttcgccttctacgaccagcggatccccgccgacgtggtctccgggcggcac
ttcgacgcgtggtggaagaagacccgacgggagcggcccgacctgctcaccttcacccgg
gacctgttggtcaacgccggccggggcggggtggacgaggcggactaccccgacgagtgg
cactccgacggggtcacgctgccgctgacctaccggttcgagccgggcaccccgaccgac
ggggtgaccgtggacatcccgctgccgctgctcaaccaggtgccggcggagaccttcgac
tggcaggtgccgggactgcgcgaggagctggtggtcgcgctgatccggtcgctgcccaag
gtgatccggcgcaacttcgtaccggtgccggacttcgcccgcgccgccctggcagcgatc
accccgggcgaggagccgctgctggacgcgctgacccgggtgctgcgccggatgaccggg
gtgaccgtgccccgcgacgcctgggagctcgacaagctgccggcgcacctgcgggtcacc
ttccgggtgctcgacgaggagaacaagccggtcgccgagggcaaggacctgccggccctg
caacgccagctcaaggccgaggtacgccaggtggtcgccgccgccgcgccggacgtggcc
cgcaccgggctgcgcgagtggagcgtcgggacgctgccgcgcaccatcgagcaggtccgg
gccggataccgggtcaccgcgtacccggcgctggtcgacgagggcgagacggtcggggtg
cgggtcttcgactccgaggccgagcaggcagcggcgatgtgggccggcacccgccggctg
ctgcggctgaccgtggccaacccggcgaagttcctccagggacggctgagcaacgaggcc
aagctggcgctgagccgcaacccgcacggcggcgtacaggcgctcatcgcggacgcgacc
ggggcggcgatcgaccggctggtcgccgacgcgggcggcccggcctgggacgccgacggc
ttcgccgcgctgcgcgagaaggtccgcgcggacctggtggacaccgtcgtcgaggtgatg
gaccgggtccggaaggtgctcgccgccgcccacgcggtgcagcagcggctgacccgcacc
accgacctgaccctggtggccgcgctggccgacatcaaggcccagctcgccgggctggtg
cacgccgggttcgtcaccgaggccgggtacgcccgcctaccggacctgctgcgctacctc
accgcgatcgagcggcggctggaccggctgcccggcaacccgcaacgggaccgccagcag
caggaccggatcgcggtggtgcagaaggagtaccaggacatgctcgccgccctgcctccg
acccggcgggacgaggagtcggtccggcagatccgctggatgatcgaggagctgcgggtg
aacgtcttcgcgcaggcgctcggcaccccgtacccggtctcggagcagcggatctaccgg
gcgatggacgcggccgagggacgctga
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