Micromonospora sagamiensis: GCM10017556_54190
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Entry
GCM10017556_54190 CDS
T06946
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017556_54190 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msag03019
]
GCM10017556_54190 (cshA)
03009 Ribosome biogenesis [BR:
msag03009
]
GCM10017556_54190 (cshA)
Enzymes [BR:
msag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM10017556_54190 (cshA)
Messenger RNA biogenesis [BR:
msag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM10017556_54190 (cshA)
Ribosome biogenesis [BR:
msag03009
]
Prokaryotic type
rRNA helicases
GCM10017556_54190 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
WSD
ResIII
CreS_N
Motif
Other DBs
NCBI-ProteinID:
BCL17680
LinkDB
All DBs
Position
complement(6340108..6341826)
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AA seq
572 aa
AA seq
DB search
MSSAPVLPEPASASTGPGDPDPASPFSDLGLRPELLGALSSLGYEEPTPIQREAIPPLLA
GRDLLGQAATGTGKTAAFALPLLNRLPAERASGDPVALVLTPTRELAVQVSEALHRYGRE
LGVRVLPIYGGQPIGRQLRALDIGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEM
LDMGFAEDIEAILEHAPAQRQTVLFSATMPARIDGMARQHLTDPVRILIAREPTVAGETP
LVRQRAFIVARAHKPAALGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGG
MSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGR
AGREGVAITLAEPREHRMLKTIERVTGQRIVIDKIPTVADLRTRRLELTQAALRESLLED
DLDPFRVIVESLSDEFDLMEVALAAVKLAHEAAGPGADDEEEIPQVPVRAPREARPGYDA
RGERRPARSRTGGTTQVFIGLGRRAGVRPQDLVGAITGETQLSGRDIGSIEIADRFSLVE
VPQSVADEVIAGLRGSTIKGRKATVRRDRDNR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgcacctgtactgcccgaaccagcgtccgcttccaccggtccgggcgacccc
gatccggcgagccccttctccgacctcggtctgcgacccgagttgctgggcgcgttgtcg
tccctcggctacgaggagcccaccccgatccagcgggaggcgatccctcccctgctggcc
ggtcgtgacctgctgggtcaggcggcgaccggcaccggcaagaccgccgccttcgcgctg
cccctgctgaaccggctcccggccgagcgtgcgtcgggtgacccggtggcgctggtgctg
accccgacccgggagctggccgtgcaggtctccgaggcgctgcaccgctacgggcgggaa
ttgggggtccgggtactgccgatctacggcgggcagccgatcgggcggcagctgcgggcc
ctggacatcggggtggacgtggtggtggcgacgcccggccgggcgctggaccacatcgcc
cggggcacgctgcgcctgggcgggttggccacggtggtgctcgacgaggccgacgagatg
ctcgacatgggtttcgccgaggacatcgaggcgatcctggagcacgcgcccgcgcagcgg
cagacggtgctcttctcggccacgatgccggcgcgcatcgacgggatggcccggcagcac
ctcaccgacccggtccgcatcctcatcgcccgggagcccaccgtggccggggagacgccc
ctggtgcggcagcgcgcgttcatcgtggcgcgggcccacaagccggcggcgctgggacgt
gtcctcgacgtggagtcccccaccgcggcgatcgtcttctgccgcagccgggaggaggtc
gaccgcctcaccgagacgatgaacggccggggctaccgggccgaggcgctgcacggcggg
atgagccaggaacagcgggaccgggtgatgggacggctgcgcgccggcaccgccgacctg
ctggtggccaccgacgtcgcggcccgggggctggacgtcgagcagctgacccacgtggtc
aactacgacgtcccgtcggcacccgagtcgtacgtgcaccggatcggccgggtcggccgg
gcgggacgggagggcgtggcgatcaccctcgccgagccgcgtgagcaccggatgctcaag
accatcgaacgggtgaccggccagcggatcgtcatcgacaagattcccacggtcgccgac
ctgcgtaccaggcggttggagctgacccaggcggcgctgcgggagagcctgctggaggac
gacctcgatccgttccgggtgatcgtggagtcgctcagcgacgagttcgacctgatggag
gtcgcgctcgcggcggtgaaactcgcgcacgaggccgccgggccgggtgccgacgacgag
gaggagatcccgcaggttccggtccgcgccccccgcgaggcccggccggggtacgacgca
cgcggcgagcgccgcccggcccgttcccgcacgggcgggacgacccaggtcttcatcggg
ctgggccggcgggccggggtccgcccgcaggacctggtcggggcgatcaccggggagacc
cagctcagcggacgggacatcggctcgatcgagatcgccgaccggttctccctggtggag
gtgccccagtcggtcgccgacgaggtgatcgccgggctgcgtggcagcaccatcaagggg
cgcaaggccaccgtgcgccgcgaccgcgacaatcgctga
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