Micromonospora sagamiensis: GCM10017556_55830
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Entry
GCM10017556_55830 CDS
T06946
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msag
Micromonospora sagamiensis
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msag03016
]
GCM10017556_55830 (rtcB)
Enzymes [BR:
msag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GCM10017556_55830 (rtcB)
Transfer RNA biogenesis [BR:
msag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GCM10017556_55830 (rtcB)
Prokaryotic type
tRNA splicing ligases
GCM10017556_55830 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCL17844
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All DBs
Position
complement(6502058..6503476)
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AA seq
472 aa
AA seq
DB search
MELVEESPYRFRIDRHGPMRVPGVVFAARALLPDLGEDRSLDQVANVATLPGIVGAAYAM
PDVHWGYGFPIGGVAATDVAAGGVVSPGGVGFDISCGVRLLAADLTRADLPRLREALLDG
LDAAVPRGMGRGEVWQLTDRAELDAVLRGGSRYAVERGHGVAADLDRCEDQGAVGDADPA
QVSDRAVQRGQGQVGSLGSGNHFLEVQAVDEVYDEPTATAFGLRTGQVCVMVHSGSRGLG
HQVCTDHVRAMERVMPRYGIEVPDRQLACAPVDSPAGRAYLGAMAAAANYARANRQLLAE
AARRVFARVAGARLDLVYDVSHNLAKLETHPVDGSPRRLCVHRKGATRAFPPGHPDLPAD
LRPVGQPVLIPGSMGTSSYVLTGVAGAPAFASTCHGAGRVRSRRQATRTVRGQDLRRDLA
ARGVAVRGTSWRGLAEEMPEAYKDVTAVVDAAEGAGLCRRVARLVPLGVVKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gtggaactggtggaggagtcgccgtaccggttccggatcgaccggcacggtccgatgcgg
gtgcccggggtggtcttcgccgcgcgggcgctcctgcccgacctgggcgaggaccggtcc
ctggaccaggtggcgaacgtggccaccctgcccggcatcgtcggtgccgcctacgccatg
cccgacgtgcactgggggtacggcttcccgatcggcggcgtggccgccaccgacgtggcc
gccggtggggtggtctccccgggcggcgtcggcttcgacatctcctgcggcgtgcggctg
ctcgccgccgacctgacccgcgccgacctgccccggctgcgggaggcgctgctggacggt
ctggacgcggcggttccccggggcatgggccggggcgaggtgtggcagctcaccgaccgc
gccgaactggacgcggtgctgcgcggcggctcccggtatgccgtggagcggggccacggc
gtcgcggcggacctggaccgctgcgaggaccagggtgcggtcggcgacgccgacccggcc
caggtcagcgaccgggcggtgcagcgggggcagggccaggtgggcagcctcggctccggc
aaccacttcctcgaggtgcaggcggtcgacgaggtgtacgacgagccgacggccacggcg
ttcgggctgcggaccggccaggtctgcgtgatggtgcacagcggctcccgaggactgggc
caccaggtctgcaccgaccacgtccgggccatggagcgggtcatgccccgttacggcatc
gaggtgccggaccggcaactcgcctgcgcgccggtggactccccggcggggcgggcgtac
ctgggggcgatggccgccgccgccaactacgcgcgcgccaaccggcaactgctcgccgag
gcggcccggcgggtcttcgcgcgggtcgccggcgcccgcctcgacctggtctacgacgtc
tcgcacaacctcgccaagctcgaaacgcatccggtcgacgggtcgccccgccggctctgc
gtgcaccgcaagggggccacccgggcgttcccgccggggcacccggacctccccgccgac
ctgcgcccggtgggtcagccggtgctgattcccggctcgatgggcacctcgtcgtacgtg
ctgaccggggtggccggcgcgccggcgttcgcctccacctgccacggggcgggccgggtg
cgcagccggcggcaggccacgcggacggtccggggccaggacctgcgccgtgacctggcg
gcccggggcgtcgccgtgcgtggtacctcctggcggggcctggccgaggagatgccggag
gcgtacaaggacgtcaccgcggtggtcgacgccgccgagggggccgggctgtgccgtcgc
gtggcccggctggtgccgctcggcgtggtcaagggctga
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