Mycobacterium saskatchewanense: MSAS_16570
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Entry
MSAS_16570 CDS
T07413
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSAS_16570 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msak03019
]
MSAS_16570 (rne)
03009 Ribosome biogenesis [BR:
msak03009
]
MSAS_16570 (rne)
Enzymes [BR:
msak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSAS_16570 (rne)
Messenger RNA biogenesis [BR:
msak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSAS_16570 (rne)
Ribosome biogenesis [BR:
msak03009
]
Prokaryotic type
rRNA processing factors
MSAS_16570 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BBX62483
LinkDB
All DBs
Position
complement(1772261..1775140)
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AA seq
959 aa
AA seq
DB search
MVDGAPPTEPTQEPTGHEDLPDRLRVHQLARALGSTNKEVLDALVSLDGRTRNVQSGVDR
EDALRVRDLIFAKPLPNIPGFSSAPAPVVARPVSRPPAESPGEPPQYMPLFVAPQPIEKD
RGGAGDASDIDTDYDSEDADTDDDEEQADRPANRRRRRGRRGRGRGRGEQGGPDGQDAGE
DDAESDSDDEDSEDSDDSDAGDEEGGSSEGATRRRRRRRRRKSGSADDNDETSSPDDPPN
TVVHERPPRSGKGGGADGNGSSNAEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAE
FLARREAVERVMVVRDRIRTEPPHPGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLG
IVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKD
PVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIR
TASEGVKEDDIRGDVTRLQERWKQIEAKAREIKEKAAGAAVALYEEPDVLVKVIRDLFNE
DFAGLIVSGDEAWNTITEYVNSVAPDLVSKLNKYETADSSEGIPAPDVFAVHRIDEQLAK
AMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRL
RDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGL
IEAFSTACPNCGGRGVLLHADPVESTSSNGRKAESGGRRGRRSKKGRSDETAEQPTVAKV
PAHAPGEHPMFKAMAAGNGRDDEESDETGEAGESADTDERTLAGATAGREDFGGVGDTED
IEDSDEDELDDEDELDDEEDLGDDDEDVGLDDDDNDDDDTDDSDDDDDSDDDDDSDDDDD
TDDDDSDDDDDNEDEDDFDGSEDSDVGGPRGAVEVQSMFGRPRRRRAAGRPAGPPIHAD
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgcaccccctacagagccgacacaagagccgaccgggcacgaggatctg
cctgaccgcctgagggtccatcagctggcccgagcgctgggcagcaccaacaaagaggtg
ttggacgccctcgtctcgctcgacggccggacccgcaacgtgcaatccggcgtggaccgc
gaggacgcgcttcgcgtgcgcgacctcatcttcgccaaaccgctgccgaacatcccgggc
ttcagcagcgcgccggcccccgtcgtcgccaggcccgtatcccgaccgccggcggagagc
cccggcgaacctccgcagtacatgccgctattcgtggcgccccagccgatcgagaaggac
cggggcggcgccggcgacgcgtccgacatcgacaccgactatgactccgaggacgccgac
accgacgacgacgaggaacaggccgacaggccggccaaccgccgccggcgccggggtcgc
cgcggccggggccgcgggcgcggcgagcagggcgggcccgacggccaggacgccggcgag
gacgacgccgagtccgactcggacgacgaggattccgaggactccgacgattcggacgcc
ggtgatgaggagggcggctcgtcggagggcgccacccgccggcgccgccgccggcggcgc
cgcaaatccgggtcggctgacgacaacgacgaaacatcgtcgccagacgacccgcccaac
acggtggtgcacgagcggccgccgcgctcgggcaagggcggtggggccgacgggaacggc
tcgtcgaacgccgagatcaagggcatcgacggctcgacgcggctggaggccaagcggcag
cggcgccgggacgggcgcgacgccgggcggcgacgcccaccggtactgaccgaggccgag
ttcctggcgcgccgtgaggccgtcgaacgggtcatggtggtgcgcgaccggatccgcacc
gaaccgccgcacccgggctcccggtacacccagatcgcggtgctcgaggacggcatcgtc
gtcgagcacttcgtgacgtccgccgcttccgcgtccctggtgggcaacatctacctcggc
atcgtgcagaacgtgctgccatcgatggaggcggcgttcgtcgacatcggccgcggccgc
aacggggtgctgtacgccggcgaggtcaactgggaggccgcggggctgggcggatccgac
cgcaagatcgagcaggccctcaagccgggcgactacgtcgtggtccaggtcagcaaggat
ccggtcgggcacaagggcgcccggctgaccacgcaggtttcgctggccggccgctacctg
gtgtacgtgccgggcgcgtcgtccaccgggatcagccgcaagctgcccgacaccgagcgg
cagcggctcaaggagatcctgcgcgaggtggtcccgtcggacgccggggtgatcatccgc
accgcctccgagggcgtcaaagaggacgacatccgcggcgacgtcacccgtctgcaggag
cgttggaagcagatcgaggccaaggcgcgcgagatcaaggagaaggcggccggcgccgcg
gtggcgctctacgaagagccggacgtgttggtcaaggtcatccgcgacctgttcaacgag
gacttcgccggcctcatcgtctcgggcgacgaggcgtggaacacgatcaccgaatatgtg
aattcggttgcgcccgatctagtttcgaagctgaacaagtacgagacggccgactcttcc
gagggcatcccggcccctgacgtgttcgcggtgcatcgcatcgacgagcaactggccaag
gcgatggaccgcaaggtttggctgccatcgggcggcacgctggtgatcgaccgcaccgag
gcgatgacggtgatcgacgtcaacaccggcaagttcaccggctccgggggcaacctcgag
cagacggtcaccaagaacaacctcgaggcggccgaggagatcgttcgccagctgcgactg
cgcgacatcggcgggatcgtcgtcatcgacttcatcgacatggtgctcgagtcgaaccgt
gacctggtgttgcgccgcctgaccgaggcactggcccgcgaccgcacccgccatcaggtg
tccgaggtgacctcgctgggcctggtgcagctgactcgcaagcggctcggaaccgggctg
atcgaggcgttctcgaccgcgtgccccaactgcggcggccgcggcgtcctgctgcacgcc
gaccccgtcgaatcgacctcgtcgaacgggcgcaaggccgagtccggcggccgccgcggc
cggcggtcgaagaagggccggtccgacgagaccgccgaacagcccaccgtggccaaggtg
cccgcgcacgcccccggtgagcatccgatgttcaaggcgatggcggcgggtaacgggcgc
gacgacgaggagtccgacgagaccggcgaggcgggcgagtccgccgacaccgacgagcgg
acgctcgcgggcgcgaccgccggacgggaggacttcggcggcgtcggcgacaccgaagac
atcgaggacagcgacgaggacgagctcgacgacgaagacgagctcgacgacgaggaagac
ctcggtgacgacgacgaggatgtcgggctggatgacgacgacaacgacgacgacgacacc
gacgacagcgatgacgacgacgacagcgatgacgacgacgacagcgatgacgacgacgac
accgatgacgacgacagcgatgacgacgacgacaacgaggacgaggacgacttcgacggc
tccgaggactccgacgtgggcggcccccgcggtgccgtcgaggtgcagtcgatgttcggg
cgtccccgccggcggcgcgccgccggccggccggccggcccgcccatccacgccgactga
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