Mycobacterium saskatchewanense: MSAS_19430
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Entry
MSAS_19430 CDS
T07413
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSAS_19430 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msak03000
]
MSAS_19430 (alkA)
03400 DNA repair and recombination proteins [BR:
msak03400
]
MSAS_19430 (alkA)
Enzymes [BR:
msak01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MSAS_19430 (alkA)
Transcription factors [BR:
msak03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MSAS_19430 (alkA)
DNA repair and recombination proteins [BR:
msak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSAS_19430 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
DUF6233
Motif
Other DBs
NCBI-ProteinID:
BBX62769
LinkDB
All DBs
Position
2095707..2097194
Genome browser
AA seq
495 aa
AA seq
DB search
MHADFERCYRAVQSKDARFDGWFVTAVLTTRIYCRPSCPVRPPFARNVRFYPSAAAAQRA
GFRACKRCRPDASPGSPEWNVRGDVVARAMRLIADGTVDREGVGGLAAHVGYTTRQLERL
LQAEVGAGPLALARAQRAQTARVLIETTDLPFGDVAFAAGFSSIRQFNDTVRLVFEATPS
ALRGRAAGRFGSDTASPGAVCLRLPVRTPFAYDGVFGHLAAATAPGCEEIRDGAYRRSLR
LPRGTAVVTLAPAVDHVRCALVLDDFRDLTTAIARCRRLLDLDADPEAVVEALSGDPDLG
PVVRKAPGQRIPRTVDESELAVRAVLGQQVSTKAARTHAGRLVAAYGQPIHDPGGGLTHT
FPSVDQLAAIDPAHLGVPEARRRTLRALIGGLADGSLALDAGSDWDSARTQLLAVPGIGP
WTAEVIAMRGLGDPDAFPASDLGLRLAADRLGLPADRRHLVEHSARWRPWRSYATQHLWT
TLDHPVNHWPPQEVA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgcagacttcgaacgctgttaccgggccgtccagtccaaggacgcccggttcgac
ggctggttcgtcaccgccgtgctgaccacgcggatctactgccgccccagctgccccgtc
cggccgcccttcgcccgcaacgtgcggttttatccaagcgcggcagccgctcagcgagcg
ggtttccgtgcctgcaagcggtgccgccccgacgcctcccccggttcccccgagtggaac
gtccggggcgatgtcgtcgcgcgagcgatgcgactgatcgccgacggcaccgtcgaccgc
gagggcgtcgggggcctcgccgcccatgtcggctacaccacccgccagttggagcggctg
ctgcaggccgaggtcggcgccggaccgctggccctcgcccgggcacagcgggcccagacc
gcccgcgtcctgatcgaaaccacggacctcccgttcggggacgtggcgttcgccgccgga
ttttcgagcatccgccaattcaacgacaccgtgcggctcgtgttcgaggccacgccgtcg
gcgctcagggggcgggcggccggccggttcgggtccgacaccgcttcccctggtgcggta
tgcctccggctgccggtgcgcacgccattcgcctacgacggcgtcttcggccacctggcc
gccgcgaccgcgcccggctgcgaggaaatccgcgacggcgcctaccggcgcagcctgcgg
cttccccgcgggaccgcggtggtcaccctggcgcccgcagtcgaccatgtccggtgcgcg
ttggtactggacgacttccgcgacctcacgacggccattgcccgctgtcgccggctgctg
gatctcgatgccgaccccgaggcggtggtcgaagcgctgtccggcgaccccgacttaggg
ccggtggtgagaaaggctcccgggcagcgcattccgcgcacagtcgacgagtcggaactg
gccgtgcgcgcggtgctgggccaacaggtgtccaccaaggccgcgcggactcacgcaggg
aggctggtcgccgcctacgggcagccgatccacgatcccggaggggggctgacgcacacc
ttcccgtcagtcgatcagctcgccgcgatcgatcccgcccatctgggggtccccgaggcc
cgtcgacgcacgctgcgggccttgatcggcggcctcgccgacggcagcctggcgctggat
gcaggaagcgactgggacagcgcccgcacgcagttgctcgcggtgccgggaatcggccca
tggaccgccgaggtgattgcgatgcgcgggctgggcgacccggacgctttccccgccagc
gacctcggcctgcggcttgccgctgaccgactcggcctgccggccgaccggcgacacttg
gtcgaacacagcgcgcgttggcgtccgtggcgctcgtacgccacccagcacctttggacc
accctcgatcatccggttaaccactggccaccacaggaggtcgcatga
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