Mycobacterium saskatchewanense: MSAS_20350
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Entry
MSAS_20350 CDS
T07413
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSAS_20350 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msak03019
]
MSAS_20350 (deaD)
03009 Ribosome biogenesis [BR:
msak03009
]
MSAS_20350 (deaD)
Enzymes [BR:
msak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSAS_20350 (deaD)
Messenger RNA biogenesis [BR:
msak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSAS_20350 (deaD)
Ribosome biogenesis [BR:
msak03009
]
Prokaryotic type
rRNA helicases
MSAS_20350 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
LytR_C
CMS1
adh_short
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
BBX62861
LinkDB
All DBs
Position
complement(2190021..2191733)
Genome browser
AA seq
570 aa
AA seq
DB search
MTPPDSSPEAASPTFADLHIHPAVMRAVGDVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSKATQALVLAPTRELALQVAEAFSRYGAHLPEIQVLPIYGGS
SYTVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEDVERI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPFEVTFKAKSATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQAQRERTIAALKE
GGAKGIDILVATDVAARGLDVDRISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVS
PRERHLLKAIEKATRQTLTEAELPSVEDVNAQRVAKFADSITDALSAPGIELFRKLVQDY
EREHDVPMADIAAALAVQSRDGEAFLMAPEPPPERRERRERPDRPERPREPRTFGTYRIA
VGKRHKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPRATLKKLEQTRISG
VLINLQPERSSDRRRNAQSGGGKPGKRHAG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacccctcccgacagctcacccgaagctgcctccccgacgttcgccgacctgcacatt
catcccgcggtcatgcgggcggtcggcgacgtcggctatgagtcgcccacggccatccag
gccgcaaccatccccgcactgatggcgggctcggacgtggtggggctggcgcagaccggg
accggcaagacggcggccttcgcgatcccgatcctgtccaagatcgacgtcacgagcaag
gcaacccaggccctggtgctggcgcccacccgcgagcttgccctgcaggtggccgaggcc
ttcagccggtacggggcacacctgcccgaaatccaggtgttgccgatctacggcgggtcc
tcctatacggtgcagctggccggactgcggcgcggcgcgcaggtggtggtcggcacgccc
ggccgggtcatcgaccacctggagcgcgggacactggacctgtcgcacgtggactacctg
gtgctcgacgaagccgacgagatgctgaccatggggttcgccgaagacgtcgaacgcatc
ctgtccgagactccggaatacaagcaggtcgcgctgttctcggcgaccatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgatccgttcgaggtcactttcaaggccaaa
tccgccaccgccgagaacatttcgcagcgctacatccaggtcgccggtccccgcaagatg
gacgcgctgacccgcgtcctcgaggtcgagcccttcgaggcgatgatcgtgttcgtccgc
accaaacaggcgaccgaagaggttgccgaaaagctcagggcccgcggtttttccgcggcc
gccatcaacggcgacatcccgcaggcgcagcgcgagcggaccatcgccgcgctcaaggag
ggtggcgccaagggcatcgacatcttggtcgccaccgacgtggccgcgcgcggactggac
gtcgaccggatctcgcacgtcctcaactacgacatcccccatgacaccgagtcctacgtc
catcggatcgggcgcaccgggagggcgggacgttcgggcaccgcgctgttgttcgtctct
ccgcgcgaacgccacctgctcaaggcgatcgaaaaagcgacgaggcagacgctcaccgaa
gccgaattgccgagcgtcgaggacgtcaacgcccagcgcgtcgcgaaattcgccgactcc
atcaccgacgcgctcagcgccccgggcatcgagctgttccggaagttggtccaggactac
gagcgcgaacacgacgtcccgatggccgacatcgccgcggcgctggcggtccagtcccgt
gacggagaggcgtttctgatggcgcccgaaccgccacccgagcggcgcgaacgtcgtgag
cgtcccgacaggccggaacgcccccgcgagccccgaacgttcggcacgtaccgcatcgcg
gtgggcaagcgacacaaggtcggtccgggcgcgatcgtgggcgccatcgccaacgaaggc
ggtctgcaccgcagcgacttcggccacatcgccattggcccggacttctcgctggtggag
ctgccggccaaattgccccgcgcgacgctgaaaaagcttgaacagacccgcatctcgggg
gtgctgatcaacttgcagccggagaggtcgtccgacaggcgtcgcaatgcgcaatctggg
ggcggtaagccaggcaaaagacacgccggatga
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