Mycobacteroides salmoniphilum: DSM43276_00046
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Entry
DSM43276_00046 CDS
T06041
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msal
Mycobacteroides salmoniphilum
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msal03019
]
DSM43276_00046 (hrpB)
Enzymes [BR:
msal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSM43276_00046 (hrpB)
Messenger RNA biogenesis [BR:
msal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSM43276_00046 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
APHB_HrpA
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
NACHT
nSTAND3
SLFN-g3_helicase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QCH21817
LinkDB
All DBs
Position
complement(43404..47306)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSELSRSALRTRLDGLTIRDASRLGRRLKNQRDADPDALAKLAEQFAAAEALVATRTAAI
PVITYPDLPVSAHREELARAISAHQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGHTQ
PRRLAARTVAERIAEELGTPLGETVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPQRFSAHFGDAPIVEV
SGRTYPVEIRYRPLEVPASGESGTKADDEPDDPDHEIVRTEIRDQTEAIAEAVRELESEP
PGDVLVFLSGEREIRDTAETLRGAFRNTEVLPLYARLPTAEQHKVFQPHTGRRVVLATNV
AETSLTVPGIRYVIDPGTARISRYSRRTKVQRLPIEPISQASAAQRSGRSGRTAPGVCIR
LYSERDFEARPRYTDPEVLRTNLAAVILQMAALQLGDIENFPFLDPPDKRSIRDGVQLLQ
ELGAFDTAGTITELGRRLARLPLDPRIGRMILQADTEGCVEEILVLAAALSIPDPRERPA
DREEAARQKHARFADDHSDFTAYLNLWRYIQDQRSQLSGSAFRRMCRDEFLHYLRIREWQ
DLVGQLRSIARDLGIRESGEPADPALVHAALIAGLLSHIGLREGDTRDYSGARNTKFVLA
PGSVLTKKPPRWVVVADLVETSRLFGRVAARIEPQSVERIAGDLVQRAYSEPHWDAERGS
VMAFERVTLYGLPLVPRRRVGYAQVDPELARELFIRHALVEGDWQSKHHFLRDNTRLLEE
LSELEDKARRRDLLVGDDEIFALYAARIPADAVSATHFDAWWRKQRHKTPDLLTFTRNDL
LRAGDAAADMPDTWRAGDVALPVSYRFEPGAADDGVSVHIPVEVLARLGGDEFAWHVPAL
REELVTALIRSLPKDLRRNFVPAPDTARVVLESLEPGAEPLVYALGRELHRLTGIRVPTE
AFDLDKVPPHLRVTFIIESADGSEVARDKNLEALQQQLAGSTRQAVAAVVAGEWERDGLR
GWPEDLAELPRTVEQVSGGHTVRGYPALVDTGTAVDIHVFATASEQRAAMAAGTRRLLRL
SIPSPMKTVERGLDPRSKLMLSSNPDGSLAALLDDCADAAVDLLAPAPVWTRAEFTTLRD
HAAQNLAATTLDIVRRAEKVVTAWSEVQVALPTKVPAVQADAIADMREQLARLLEGGFVA
ATGAARLADLARYVTAIGNRLERLPQGVEADRERMQRVHTVEDTYDDLLRDLPAGRADDP
DVRDIAWFIEELRVSLWAQQLGTARAVSEQRILKAINAAR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaattgtcccgttccgcgttgcgcacgcgcctcgacggactgaccattcgcgac
gcatctcggctcgggcgccgtctcaagaatcaacgtgacgcggaccccgacgcgctggcg
aaactcgccgaacagttcgccgccgccgaggccctggtcgccacccggaccgctgcgatc
cccgttatcacgtacccggatctgcccgtcagcgcacaccgcgaggaactcgcccgggcg
atctccgcgcatcaggttgtcgtcgtcgccggcgcgaccggatcgggaaaaaccacccag
cttcccaagatctgcctggagctgggccgcggcatccgcggcaccatcgggcacacccag
ccgcgccggctggcggcacgcaccgtcgccgagcgcatcgccgaggagctgggtactccg
ctcggtgagaccgtgggctacaccgtcagattcaccgatcaggccagcgatcgcaccctc
gtcaaactgatgaccgacggcatcctgctcgcagagatccagcgcgaccggcgactgctg
cgttatgacacgctcatcctcgacgaggcgcatgagcgcagcctcaacatcgacttcctg
ctcggctatctgcgcgagctgctgccgcggcggcccgacctgaaggtcatcgtcacctcg
gcaaccattgagccacagcgattttcggcacatttcggcgacgcacccatcgtcgaagtc
tccggccggacgtaccctgtcgagattcgttaccggccactggaagtccccgcatccggc
gagtccggtacgaaagctgacgacgaacccgatgaccccgatcacgagatcgtccgtacc
gagatacgcgaccagaccgaagccatcgccgaagccgtccgcgagctggagagcgagccg
cccggggacgtgctggtgttcctgtccggcgagcgtgagatccgggataccgccgagacc
ctgcgcggcgcctttcgtaacaccgaggtacttccgctgtacgcgcggctgcccacagcc
gagcagcacaaggtctttcagcctcacaccggtcggcgcgtggtactggccaccaacgtc
gccgaaacctcgctgaccgttcctggcatccggtatgtcatcgaccccggcaccgcacgc
atctcccgctacagccgacgcaccaaggtgcagcgcctgcccatcgaacccatctctcag
gcgtcggccgcgcagcgctccggccggtccggacggaccgcgcccggcgtgtgcatcagg
ctgtactccgagcgggattttgaggcccgaccccgatacaccgatccggaggtgctgcga
accaaccttgccgccgtcatcctgcagatggcggccttgcaactcggtgatatcgagaac
ttccccttcctggatccgcccgacaagcgcagcatccgcgacggtgtgcagctgctgcag
gaactgggcgccttcgacaccgccggcaccatcaccgagctggggcgccggctggcgcgc
ctaccccttgacccgcgcatcgggcggatgattctgcaggccgataccgaaggctgcgtc
gaggagatcctggtgctcgcggcagcattgtcgattcccgatccgcgcgagcgcccggca
gaccgcgaggaagccgcccgccaaaaacatgcccggttcgccgacgaccattccgacttc
accgcctacctcaatctctggcggtatatccaggatcaacgaagccaactctcgggcagt
gcgtttcggcgtatgtgccgggacgagtttctgcattacctgcgtatccgggaatggcag
gacctggtgggccagttgcgcagcatcgcgcgcgacctcggcattcgagagtcgggggag
ccagccgacccggcccttgtccacgccgcattgatcgccgggctgctgtcccacatcggg
ttacgcgagggcgacacccgcgactactccggcgcgcgtaacaccaaattcgtgctggct
cccggttcggtgctcaccaagaagcccccgcggtgggtggtcgtcgccgacctggtggag
accagccgattgttcggccgggtcgcggcacgcatcgagccgcaatcggtcgagcgaatc
gccggggatctggtgcagcgcgcctacagcgagccgcactgggacgccgagcgcggctcg
gtgatggccttcgagcgggtaacgctgtacgggctgcccctggtgccccgccgccgcgtg
ggttacgcgcaagtcgatccggagctggcccgcgaattgttcatcaggcacgccctcgtg
gagggcgactggcagagcaagcaccacttcctgcgagacaacacgcgattgctggaagag
ctgtccgagctcgaggacaaagctcgccgccgcgacctgctggtgggcgatgacgagatc
ttcgcgctgtatgcggcgcgtattcccgcggacgcggtgtccgcaacgcactttgatgcc
tggtggcgcaagcaacggcacaagacaccggatctgctgacattcacccgtaacgatctg
ctgcgcgccggggacgcggccgccgacatgcccgacacctggcgagcgggcgacgtggcg
ctgccggtcagctatcgattcgaaccgggcgcggccgacgacggcgtgtccgtgcacatc
ccggtggaagttcttgcccgtctcggcggtgatgaatttgcctggcatgtaccggcttta
cgcgaagagctggtcaccgccctcatccgctcgctgcccaaggatctgcgccgcaacttc
gttcccgcacccgataccgcccgcgtggtgctcgaaagcctcgaacccggcgccgaaccg
ctggtgtatgccttggggcgcgagctgcatcggctcaccggcatccgcgtccccaccgaa
gccttcgacctggacaaggtgcccccacacctgcgggtgaccttcatcatcgagtccgcc
gacggctccgaggtggcgcgcgacaagaatctcgaagcactgcaacagcagctcgcgggt
tctacccgccaggccgtggcggcagtggtggcgggggagtgggaacgcgacggcctacgt
ggctggcccgaagatctagccgaattgccccgcactgtggaacaagtcagcggtgggcac
accgtgcgcggatacccggccctggtggacacgggcaccgccgtggacatccacgtgttc
gccaccgcctccgagcagcgggcagccatggcagccggcacccggcgcctgctgcggctg
tccattccgtcgcccatgaaaaccgttgaaagaggcttagacccgcgctccaagctgatg
ctctcctcaaatccggacggctcgctggcggctctgctcgatgattgcgccgacgctgca
gtcgatctgctggcgcccgcaccggtctggacccgggcagagttcaccacgcttcgagac
cacgccgcacagaatctggcggcgaccacgctcgatatcgtgcgccgtgccgagaaggtg
gtgacggcctggagcgaggtgcaggtggccctgcccaccaaagtgcctgcggtgcaagcc
gatgcgatcgccgacatgcgcgaacaacttgccaggttgctcgagggcgggttcgtcgcg
gccaccggtgcggcgcggctggcagacctggcacgctacgtcaccgcgatcgggaatcga
ctggagcgcctaccgcagggcgtggaagcggaccgcgagcgcatgcaacgcgtgcacacc
gtggaagacacctacgacgacctactgcgcgacctgcccgccgggcgcgcagacgatccc
gacgtcagggacatcgcatggttcatcgaggagctgcgcgtgagcctgtgggcccagcag
ctcggtaccgcgcgagccgtcagcgagcagcgaatcctcaaggccatcaacgccgctcgc
taa
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