Mycobacteroides salmoniphilum: DSM43276_00905
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Entry
DSM43276_00905 CDS
T06041
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msal
Mycobacteroides salmoniphilum
Pathway
msal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSM43276_00905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msal03400
]
DSM43276_00905
Enzymes [BR:
msal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSM43276_00905
DNA repair and recombination proteins [BR:
msal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSM43276_00905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCH22662
LinkDB
All DBs
Position
907200..909476
Genome browser
AA seq
758 aa
AA seq
DB search
MRLSNAEKVLYPDTGATPATTKADVFSYYTAIAPFMLPHIVGRPVTRKRWPNGVGQPSFF
EKDLASSAPDWLPRRRIEHKSRYVTYPLIDTSVALAWIAQQAALEVHVPQWRFAGENPGP
ATRLVFDLDPGEGVVLSQLAQVARAVRDVLDDIGLTTFPLTSGSKGLHLYVPLAQPVSSS
GAVTVAKKVAVQLEQSMPELVTATMTRELRAGKVFVDWSQNSGSKTTVAPYSLRGREAPT
VAAPRTWEELDDPELRQLRFDEVLARAERDGDLLAGLDDVEIIEDRLSTYRSMRDPARTP
EPVPAVEPQVGHDSSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPMEPSVNHLAVHT
EDHPLEYGTFEGTIPKGEYGAGEVTIWDSGTYDTEKFIDPRDDSGPDGGAKGEVIVTLHG
KRISGRYALIRTGGKQWLAHRMKDQRSPATMPAGLAPMVPTTGSVAALAADEWAFEGKWD
GYRLILECDHGQLRALARSGRDVTAEFPALQRLAHELGDHRVVLDGEVVVLDPNGLPSFS
LLQNRTAGTETQFWAFDLLYLDGKSLLSNKYRDRRRLLDVLGASTEEMAVPAQLSGDGAA
ALAHSHDQGWEGVVAKRLDSSYAPGRTQSWIKAKNWSGQEIVIGGWRKGKGGRSSGIGAL
LMGIPDEDGLRYVGRVGTGFTEKELASLKARLEPLHRDESPFSAALSAVEAKDVQFVEPV
LVGEVRYGDRTPGGILKHSSWRGLRTDKSVGDVELDLG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcctttccaatgcggaaaaggtgctgtacccggataccggggctactccggccacg
accaaggctgatgttttcagctactacacggccattgcgcccttcatgctgccgcatatc
gtggggcgcccggtcacccgcaagcggtggcctaatggagttggccagccgtcgttcttc
gagaaggacctggcgtcgtctgcccccgattggcttccgcggcggcgcatcgagcacaaa
tcccgctacgtcacctacccgttgatcgacacctcggtggcactggcctggatagcccag
caggcggcattggaggtgcatgtgccgcagtggcgtttcgctggcgaaaatcccggtcca
gcaacacgattggtgtttgatctagatcctggcgagggggtggttctgtcgcagctggcg
caggtcgctcgagccgtgcgcgatgtactcgacgatatcggcctgactacctttccgttg
accagtggtagcaagggtcttcacctgtatgtgccgttggcgcaacccgtcagttcgtcc
ggggcggtgaccgtcgcaaaaaaggtcgcggtccagctggagcagtcgatgccggaactg
gtgaccgcgacgatgacccgggagctgcgtgccggcaaggtcttcgtggactggagtcag
aacagcggttccaaaacgacggttgccccctactcattgcgcggtcgcgaggcgccgacc
gttgccgcaccgcgtacctgggaggaactggacgatccggagctgcgtcagctgcgcttt
gacgaggtgctggcgcgcgccgaacgtgacggtgacctgctggcaggactggacgatgta
gagatcatcgaggacaggctgtccacgtaccgcagcatgcgcgatcccgcgcgtacgccc
gaacccgtgcccgccgtcgaaccgcaggtaggccacgacagttcgtttgtcatccaagag
catcacgccaccgcgctgcactacgacttccggctggagcgcgacggcgtgctggtctcg
tgggcagtgcccaagaatctgccgatggaaccctcggtcaaccatctcgcggtgcatacc
gaggatcacccgctggagtacggaacttttgagggcaccattccgaagggggagtacggc
gcgggagaggtgaccatctgggactcgggcacgtacgacaccgagaagttcatcgatccg
cgcgacgactccggccccgacggcggggccaaaggcgaggtcattgtcactctgcacggc
aagcgaatatcggggcgttacgcgctgatccgcaccggcggcaagcaatggctggcgcac
cgcatgaaggatcagcgatcacccgccacgatgccggccggcctcgcgccgatggtgccg
accaccggatccgtggcggccctggcggccgatgagtgggccttcgaagggaaatgggat
ggctatcgcctcattctcgaatgcgaccacggccagctgagggccttggcgcgcagcggg
cgtgatgtcaccgcggagttcccggccttgcagcggctcgctcacgaattaggcgatcac
cgtgtggttctggacggggaggtggtggttttggatccgaatgggttaccgagtttctcg
ctgctgcaaaatcggacggcgggtaccgagacccagttctgggccttcgatctgctgtat
ctggatggaaaatccttgttgagcaacaagtatcgtgacaggcgccgactgcttgacgtg
ctcggtgccagcaccgaggagatggccgtgccggcacaactgagcggcgatggcgctgcg
gctctggcgcattcgcatgaccaggggtgggagggcgtcgtcgccaagaggctggattcc
agttacgctccgggccgcactcagtcctggatcaaggcgaagaactggagcggccaggag
atcgtcatcggcggttggcgtaagggcaagggtgggcgcagcagcggaataggggccctg
ttgatggggataccggacgaggacgggcttcgttatgtgggacgggtgggtaccgggttt
acggagaaggagttggcgtcactcaaggcgcggctagaaccgctacatcgcgatgaatcg
ccttttagtgcagcactttccgcggtcgaggccaaggatgtgcagtttgtcgagccggtg
ctggttggcgaggtccgctacggcgatcgcacgcccggtgggattctcaagcactccagc
tggcgtggtctgcgcaccgacaagtcagttggcgacgtcgagctcgatctcgggtag
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