Mycobacteroides salmoniphilum: DSM43276_01013
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Entry
DSM43276_01013 CDS
T06041
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msal
Mycobacteroides salmoniphilum
Pathway
msal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM43276_01013 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msal03400
]
DSM43276_01013 (mfd)
Enzymes [BR:
msal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM43276_01013 (mfd)
DNA repair and recombination proteins [BR:
msal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM43276_01013 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCH22768
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All DBs
Position
1011646..1015299
Genome browser
AA seq
1217 aa
AA seq
DB search
MTVTAPPLAGVIRTALRDPAFDVLAPAIAAKTGLDLTAPSCARAFVVTGIADASDAPVLV
VTATTREAQDLVAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDS
RMGPPLRVAVTTIRSLLQPMSPGLFDLEPVELTVGAESEFDGLISRLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELEVTSVLAMPCRE
LLLTAQVRARAAELAAVASASAEVPDEHRIGTGVGEMLAKLADGICVDGMESLLPVLHSG
ELTMLVDHLPDNAPVLVCDPEKVRTRSADLERTGREFLEASWSVAAIGADAPIDIAALAD
SGFRELDDVKHTADEAGHPWWSLSPLSMGDDRSVELAVRQSPSSRGHKEGAAEIFAMLRA
HVMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGAVLP
GANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVER
TVGGARREYLVLEYGSSKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWT
NTKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITE
VKSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD
RTAGFPVKVAGLSRFTDPATSKLVIEGMADGSVDIVIGTHRLLQTAVRWKDLGLVVVDEE
QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG
PHDDKQVAAALRRELLRDGQAFYVHNRVSTIDRAAARLRELVPEARVVVAHGQMPEELLE
RTVEGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGY
AYFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVG
FDLYVRLVGEAVEAYRAAADGKTVQTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRR
LAAAGDAAQINAAVEELLDRYGPLPLPVQRLVAVASLRLLCREMEITDLSVAGTNIRIQP
LPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSERIRDLELVHMIVDLLLAL
SGRPAGSVDITRVEVSK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgactgccccgcctctcgccggggtgatccggacagccttgcgggatcccgca
ttcgatgttctcgccccggccatcgccgccaagaccggccttgatctgaccgcaccgtcg
tgtgcccgtgccttcgtggtgaccggtatcgccgacgcgagcgatgcgcccgtcttggtt
gtgacggccaccacccgggaggcgcaagacctcgtcgccgagctgcgcgatgtatacggc
gatgcggtgacgctgttgccgtcctgggagacgcttccccatgaacggttgtcgcccggt
gtcgacaccgtgggtgcacggctgcaggtgctgcaccggctcgcccatccggaggattcc
cggatggggccaccgctgcgggtcgcggtcaccacgattcgatcgctgttgcagccgatg
tctcccgggctgttcgatctggagcccgtggagctcacggtcggtgccgagtcggaattc
gacggactgatctcccggctggtcgagcttgcctacacccgggtggacatggtggcgggc
cgcggtgagttcgcggtgcgcggcggcattctcgatgtcttcagccccaccgcggaccat
ccggtgcgtgtcgagttctggggcgacgaggtcagcgagatgcgctacttctcggttgcc
gaccagcgatcgatccccgagctggaggtcacctccgtgctcgcgatgccttgtcgcgaa
ctgctgctcaccgcgcaggtgcgtgctcgtgccgccgagcttgccgcggtggccagtgcc
tccgcagaggtgcccgatgagcaccggatcgggaccggcgtgggggagatgctggccaag
ctggcggatggcatctgcgtcgacggcatggaatcgctgctgcccgtgctgcattcgggt
gagctcaccatgctggtcgaccatctacctgataacgcccccgtgttggtctgcgatccc
gagaaggtgcgcacccgatcggcggacctggaacgcaccggccgtgagttcctggaggcc
tcctggtcggtcgccgcgatcggcgccgatgcgccgatcgatattgccgcgctggccgat
tcggggttcagggagctggacgacgtcaagcacaccgccgatgaggccggacatccctgg
tggtcgctgagcccgctgagtatgggtgatgaccggtctgttgagctcgcggtgcgtcag
tcgccatcctcgcgcggtcacaaggagggcgccgcggagattttcgcgatgctgcgcgcc
catgtgatgacgggtggacgggcggccgtggtggccgccggtgcgggcaccacccaccgg
atcatcgagcagctggccgaaacggaaacgccggcaacactgctggagcccggagccgag
cccgccgagggtgtggtcggagtgttgcgcggtcacctcaccgacggtgcggtgctgccg
ggggccaacatcgtcatcgtcaccgagaccgacctgaccggcagtcgggtggcggccacc
gatggcaagcggttaccggccaagcgtcgcaaccaggttgacccgctggccctcagtgcc
ggcgatctcgtggtacacgatcagcacggcatcgggcgatttgtcgagatggtggaacgc
accgtcggcggagcccgtcgggagtacctggtgctggagtacgggtcgagcaagcgcgga
gccgccgccggtgggcagagcgatcgcctgtatgtgccaatggattccctcgatcagttg
tcccggtacgtgggtggtgagtcccccggcctgagccgcctcgggggtagcgactggact
aacacgaagaccaaggcgcgcaaggctgttcgtgagatcgccggtgagctcgtcgcactg
tacgcggcgcgacaggccgcacccgggcacgctttcgcgccggacactccgtggcagcgg
gagatggaagacgccttcggcttcgtcgagaccgtcgatcagctgaccgccatcaccgag
gtgaaatccgatatggagaaaccggtcccgatggaccgggtggtgtgcggcgacgtgggc
tacggcaagaccgagatcgcggtgcgcgccgcgttcaaggccgtccaggacggcaagcag
gtcgcggtgttggtgcccacgacactgttggcagaccagcacctgcagaccttcaccgat
cgcaccgcggggtttccggtgaaggtggcgggcttgtcccgctttaccgatcccgccacc
tcgaagctggtcatcgagggaatggccgacggctcagtcgatatcgtgatcggcacccat
cgtctgctgcagacggccgtgcgatggaaggacctcggtctggtggtcgtcgacgaggag
cagcgcttcggcgtcgaacacaaggaacacatcaaggcgctgcgcacccatgtggacgtt
ctcacgatgagtgcgacgccgattccgcgcacgctggagatgagcctggccggcatccgg
gagatgtcaacgattctcactccaccggaggagcgctacccggtcttgacgtacgtgggc
ccgcatgacgacaagcaggtggcggcggcactgcgccgcgagctgctgcgcgacgggcag
gcgttctacgtgcataacagggtgagcaccatcgacagggccgccgcccggctgcgtgag
ctggtgccggaggccagagttgtggtggcgcacggtcagatgcccgaggaactgctggag
cgcaccgtcgaggggttctggaaccgggagtacgacatcctggtgtgcaccaccatcatc
gagacggggctggacatctccaacgccaacacgttgatcgtggagcgggccgatatcttc
gggctgtcgcaactgcatcagctgcgtggtcgcgtcggtcgcagccgcgaacgcggatat
gcgtacttcttgtattcgcccgaggtgccgctgaccgagaccgcgtacgacaggctctcg
actatcgcgcagaacaacgatctgggcgccggtatggccgtggccatgaaggacctggag
attcgtggtgcgggcaacgtgctcggtgtcgagcaatccggtcacgtcgccggggtgggt
ttcgatctctacgtccggcttgtcggcgaggccgtcgaggcataccgcgcggccgccgac
gggaagacggtgcagaccgcggaggagcccaaggaggtgcgtatcgatcttcctgtcgac
gcgcatctgcccacggactacatcggcagcgatcggttgcgcctcgaggcgtaccgcagg
ctggcggcggccggggacgccgcgcagatcaatgcggccgtggaagagctcctggaccgc
tacgggccgctgccgcttccggtgcagcgactggtcgccgtggcctcgttgcggttgctg
tgccgcgagatggaaatcaccgatctgtcggtagccggcaccaatatccgaatacagccg
ctaccactgctggattcggcgcaattgaggctcaaacgtttacacccggcggctcaatat
cgtgcgacgacttccgttgtccaggttcccattccgcgcgccggcgacgggggtgtgggc
tcggagcggatccgtgacctggagctcgtgcatatgattgttgatctgctgctggcattg
tcggggcgtcccgcgggcagtgttgatataacacgagtggaggtgagcaaatga
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