Mycobacteroides salmoniphilum: DSM43276_03340
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Entry
DSM43276_03340 CDS
T06041
Symbol
uvrD1_2
Name
(GenBank) ATP-dependent DNA helicase UvrD1
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msal
Mycobacteroides salmoniphilum
Pathway
msal03420
Nucleotide excision repair
msal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM43276_03340 (uvrD1_2)
03430 Mismatch repair
DSM43276_03340 (uvrD1_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msal03400
]
DSM43276_03340 (uvrD1_2)
Enzymes [BR:
msal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM43276_03340 (uvrD1_2)
DNA repair and recombination proteins [BR:
msal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM43276_03340 (uvrD1_2)
MMR (mismatch excision repair)
Other MMR factors
DSM43276_03340 (uvrD1_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCH25066
LinkDB
All DBs
Position
complement(3360795..3364013)
Genome browser
AA seq
1072 aa
AA seq
DB search
MSAYSPSELSRALGLFEPTDEQAAVIGAPPGPMVVIAGAGAGKTETMAARVVWLVANGYA
TPGQVLGLTFTRKAAGQLLRRVRSRLARLAGSGIMAPVTADEPDPVIATYHAYAGTLLRE
HGLLLPMEPSARLLTETQLWQLAFRLVCDFDGDLDTEKTPGAVTAQVLALAGQLSEHLVD
TSDLLSSHDELEQLIHTLPPGPYQREGRPSAWLLRLVETQRERAQLVAIVEQLMTQMRAR
GVLDFGVQMSLSARLAADHAVVGQTQRDRYRVVLLDEYQDTGHAQRILLSSLFGRGVDPE
LALTAVGDPIQSIYGWRGASATNLPRFTTDFPLPDGSPAPTRELRTSWRNPPEALHLANA
VSEEARRRSVAVRPLRPRPDATSGKIACALFGDVVAEREWVATKLASVYEEAHRSGNRPP
SSAVLVRRNSDAAPMAEVLAAHGVPVEVVGLTGLLGLPEVADTVAMLRLVADPTAGPAAL
RVLTGPRWRLGAHDLAVLWRRATGFGRSGTDVVGEHADIPCLADAISDPGAPEQYSPDGW
TRLSALRRELSALRARLGMPLTDLISEVQRVLALDVELVAGRRTGGLEQLRAFTNVAADF
AEAADQSDPVGVIAAFLQYLDAAWEVEKGFTPVEVATSPGRVQILTVHSAKGLEWDVVAV
PHLSAGVFPSGVAASTWLTSATELPPLVRGDRATLGDRFGVPQLDTEGITNRKQLSDAIA
RHKDSLATRRIDEERRLLYVAVTRSAEQLFVSGHHWGQTGLKPKGPSDFLVELRDVIENA
AAEGIPCGTVEEWVTAPAAGERNPMLDQTVQAPWPADPLAGRRSEIEAGAQMVREARAGT
APLAEDEDEDLDGWAADVDALLREREQAHRRPEITLPQHLSVTSLVELRKDPQALARRLM
RPRPTRPDLEARRGTAFHSWVQRHFGSVRLIDFDDLPGDGYGEFEDAEDLAALQSAFLAS
QWADRTPAETEVPFEISVAGTIVRGRIDAVFGSRDGTWTVVDWKTGHEPSGVEMEAAALQ
LAVYRQAWAALQGIDPAQVSAAFHYVRTGRTVAPAELPELPQATEFAELTGD
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcatactccccatccgaactatccagggcgcttgggcttttcgagcccacggat
gagcaggccgccgtgataggggctccacccggtccgatggtggtgatcgcgggtgccggt
gcgggtaagacggagacgatggccgcccgggtggtgtggctggtggccaacggttacgcc
acccctggccaggtgctcgggttgacgtttacccgcaaggccgcgggccagttgttgcgc
cgggtcagatcgcgcctggctcggctggcgggaagcgggatcatggcgcccgtcacggcc
gatgaacccgatccggtgatagccacctaccacgcctatgccggaaccttgctgcgcgag
cacgggttgctgctgcccatggagccgagtgcgcgcctgctgaccgaaacgcagttgtgg
cagttggcgttccggttggtctgcgatttcgacggggatctggatacggagaagacgccc
ggtgcggtcaccgcccaggtgctcgcgttggctggtcagctgtctgagcatctggtggac
accagcgatctgctgtcctcgcatgacgagctggaacagctgattcataccctgccgccc
ggcccctatcagcgggagggccggccgagtgcgtggttgttgcgtctggtggagacgcag
cgtgaacgagcgcagctcgtcgcgatcgtagaacagctgatgacgcagatgcgtgcccgc
ggtgttctcgatttcggagtgcaaatgtcgctgtcggctcgtctggcggccgaccacgcc
gtcgtgggacaaactcagcgggatcggtaccgcgtggtgctgctcgacgagtaccaggac
accgggcatgctcaacgcatcttgctgtcgtccttgttcggtcggggcgtcgatcccgag
ctggcgttgaccgcagtgggtgatccgatccagtccatctatggctggcgcggcgcgtcg
gcgacgaatttgccccgattcaccacagatttcccgctgccggacggatcgcccgcgccg
acaagggaactgcgcaccagctggcgcaatccaccggaggctttgcacctggccaatgcc
gtgtccgaggaagcgaggcggcgttcggtggcggtccggccgttgcgtccccggccggac
gctacctccggcaagattgcttgcgcgctgttcggcgatgtcgtcgccgaacgagaatgg
gtcgcaacaaaactggcctcggtgtacgaggaggcgcatcgtagcgggaaccgtccgccg
tcgtcggcggtgctggtcaggcgcaacagcgatgccgcccccatggcagaggtccttgcc
gcgcatggtgttccggtcgaagtggtgggtttgacgggtctgctcggtcttcccgaggtc
gccgataccgtggcgatgctgcgtctcgtcgcagacccgaccgcgggtccggccgcgctg
cgcgtgttgactggtccgagatggcgtcttggagcacacgacctggcggtgctgtggcga
cgcgcgacgggattcggtcggtccggcaccgacgtggtgggggagcacgcggacattccg
tgcctggccgacgccatcagcgatcccggtgcgcccgagcagtattcgccggatggttgg
acccgcctgagcgcgctgcggcgcgaactgtccgcgttacgtgcccggctgggaatgccg
ctcaccgacctgatctccgaagtgcaacgcgtgttggcgctcgatgtcgagctcgtcgcc
ggtcgccgcacgggtggcttggaacagctgcgcgcgttcaccaatgtcgccgccgatttc
gcggaggctgccgatcagagcgacccggttggggtgatcgccgcgtttctgcaatacctg
gacgcggcgtgggaggtcgaaaagggtttcacgccggtggaagtcgcaaccagcccgggg
cgggtgcagattctgactgtgcattcggccaaggggctggaatgggatgtggtcgctgtc
ccgcatctgagtgccggagtgttcccgtcgggtgtggccgcgtcgacctggctgacgagc
gccaccgagctaccgccgttggtgcgcggagatcgcgccaccttgggggatcgtttcggc
gtcccgcagctggacaccgagggcatcacgaaccgtaagcaactctccgatgccatcgcg
cggcataaggacagcctcgccactcgccggatcgatgaggagcgccggctgttgtatgtg
gcagttacccgatcagccgagcagctctttgtctcgggacatcattggggccagaccgga
ctcaagcccaagggaccgtccgattttctggtcgagttgcgtgatgtcatcgaaaacgct
gccgccgaaggtattccctgtgggactgtcgaagagtgggtcaccgcacccgcagcgggt
gagcgcaatcccatgctcgaccagactgtccaagcaccatggcccgccgacccactcgcc
ggccggcgcagcgagatcgaagcgggagcgcagatggtacgggaagcgcgcgccggtaca
gcacctctggccgaggacgaagacgaggatctcgatggatgggccgccgatgtcgacgcg
ctgctgcgtgagcgtgagcaagcccatcgtcgtccggaaattacacttcctcaacatctt
tcggtgacaagcctcgtcgagctgcgcaaggatccgcaggcgttggcacgcaggctgatg
cgtccgcgccccacacgtccggacctcgaagcgcgccgtggcaccgcattccactcctgg
gtgcaacgtcacttcgggtcggtacgcctgatcgatttcgacgatcttccgggtgacggc
tacggggagttcgaggacgccgaggatctggcggcgctgcagtcggcgttccttgcctcg
cagtgggcggaccgaactcccgccgagaccgaggtgccgttcgagatttccgttgccggg
accattgtccgtggtcggatcgacgcggtgttcggatctcgcgacggcacctggaccgtc
gtggactggaagaccggtcacgagccttcgggtgttgagatggaggccgcagccctgcag
ctggccgtgtaccggcaggcatgggcggcgttgcaaggcatcgatcccgcacaggtgagc
gcggcattccactacgtgcgcacggggcgcacggtcgcccccgccgaactacccgagctg
ccgcaggcaacagagttcgcggagctgactggggattga
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