Micropterus salmoides (largemouth bass): 119882434
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Entry
119882434 CDS
T07309
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119882434 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msam03021
]
119882434 (supt5h)
03019 Messenger RNA biogenesis [BR:
msam03019
]
119882434 (supt5h)
Transcription machinery [BR:
msam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
119882434 (supt5h)
RNA polymerase I system
119882434 (supt5h)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
119882434 (supt5h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
RimP_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
119882434
NCBI-ProteinID:
XP_038548398
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MSDTDDSDFSDNQSERSSDGEAEEVENEEETGSPVGSDKVAEEEGEDLDDEEEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKVNEEAEVSNIDHVVLDE
DHSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHYSGGSEELSDDITQQQLLPGVKDP
NLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKS
AIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVE
PSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGD
FMIFEANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHHGGGGAPQRGGGAGGGGGGGGGGGGGMGRGRGRRDNELIGQTVR
ISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRPSGMTSTHGRTPMY
GSQTPMYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSR
NEEEYDFGYDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYS
PYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYS
PMTPGAPSPGGYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQTGVIRSVTGGMCS
VFMQESEKVVSISSDHLEPITPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQL
KILNLRFLGRLEH
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaccgacgacagcgacttctctgacaaccagagtgagcgcagcagcgacgga
gaggccgaggaggtggagaatgaggaggagaccggtagccccgtgggcagcgacaaggtg
gcagaggaggagggggaggatctggacgatgaggaggagtacgatgaagaggaggaggag
gacgatgatgaccgccccaggaaaaaaccaagacatggaggcttcatcctggacgaagcc
gatgtggacgatgagtatgaagatgaggaagatcagtgggaggaaggagctgaagatatt
ctggagaaagttaacgaggaggctgaagtgtccaacatcgaccatgtggtcctggatgag
gatcactctggatccagaaggctgcaaaacctctggagagactccagagaggaggcgctg
ggtgaatactacatgaggaagtatgccaagtcctcaggaggggagcattactcaggaggg
tccgaggaactttccgatgacatcacccagcagcagctacttcctggggtcaaggatccc
aatctgtggacggtcaagtgcaagatcggagaggagagggcgacggccatcgcactgatg
aggaaattcatcgcctaccagttcacagacacgcctctacagatcaagtctgtggtcgcc
ccggatcacgtcaaaggttacatctacgttgagtcgtacaagcagacgcacgtcaagtcg
gccatcgaaggcatcggcaacctgaggatgggcctgtggaaccagcagatggttcccatc
aaagagatgacggacgtcctcaaggtcgtcaaagaggtcaccaacctgaagcccaagtcc
tgggtccggctaaagagaggcctgtacaaggacgacatcgctcaggtggactacgtggag
ccgagtcagaacaccatctccctgaagatgatccctcgtatagacctggaccgtatcaag
gccaagatgagcctgaaagactggttcgctaagaggaagaagtttaagagacctgctcag
aggctgtttgatgctgaaaagatcaggtctctcggaggggaggtcagccatgacggagac
ttcatgatctttgaggcgaaccgttacagccgcaaaggattcctgtttaagagtttcgcc
atgtctgctgtgatcacagacggagtgaagcccactctgtcagagctggagaagtttgaa
gaccagcctgaaggaatcgacctggaggtggtcaccgagtcagggaaggagcgcgaacac
aacctgcaggccggtgacaatgtggaggtttgtgagggagagttgatcaacctgcaggga
aaaatcctcagtgtggacggcaacaagatcaccatcatgcccaaacacgaagacctgaag
gaccccctggagttcccggctcacgagttgagaaagtatttccggatgggcgaccacgtg
aaggtgatcgccgggagatacgagggtgacacgggcctcattgtcagagtggaagagaac
tttgtcatcctcttctccgacctcaccatgcacgagttgaaggtgttgcccagagacctg
cagctttgctcggagacggcgtccggcgtcgatgcaggagggcagcatgagtggggcgag
ctggtccagctggacccacagaccgtcggagtcatcgtccgactggagagagagacgttt
caggtgttaaacatgcacgggaaggtaatgactgtgcggcaccaggcggtgaaccgcaga
aaggacaaccgcttcgctgtggctctggactcggagcagaataacatccacgtcaaggac
attgttaaggtcatcgacgggccgcactctggccgtgaaggggagattcgtcacctgttc
cgaggcttcgccttcctccactgtaagaagttggtggagaacggaggcatgttcgtctgc
aagaccagacacctggtgttggctggtggttccaagcccagagacgtgaccaacttcacg
gtgggaggatttgctccaatgagccctcgcatcagcagtcccatgcaccatggcggagga
ggtgctccacagagaggaggaggagcaggaggaggaggaggtggtggtggaggaggagga
gggggaatggggcggggcagaggacgacgagacaacgagctgattgggcagacggtccga
atctctcagggtccttacaaaggttacattggtgtggtgaaggacgcaacggagtccaca
gccagagtggagctgcactccacctgtcagaccatctctgtagacagacagcgcttaact
accatgggagctaagagaccaagtggaatgacctccacccacggacgaactcccatgtac
ggctcccagactcccatgtacgggaccggctccagaacgccaatgtacgggtctcagacg
ccgctgcatgacggaagccgtacgcctcactacggctctcagaccccactgcatgatggg
agcaggacgccaggtcagagtggagcctgggaccccagcaaccccaacacaccttccagg
aacgaagaggagtacgactttggttacgacgacgagccctcaccgtcccctcagggctat
ggggggacccccaacccccagaccccgggttacccagaagtcccctctccgcaggttaac
cctcagtacaaccctcagacacctggcacgcctgctatgtataacacagagcagtattct
ccctacgcggccccgtcccctcagggctcctaccagcccagtcctagccctcagagctac
caccaggtggcgccctcaccggtcggctaccagaacacgcactccccagccagctaccat
ccgacaccctcccccatggcttaccaggccagtcctagtccaagtcctgtgggctacagt
cccatgacgcctggagcgccctctcctggaggttacaaccctcacaccccgggctccaac
attgagcagggcagcagcgactgggtgaccaccgacatcctggtccgggtgaaggactcc
ttcatggacctgatgggacagaccggggtcatcaggagtgtcacgggagggatgtgttca
gtgttcatgcaggagtcggagaaggtggtcagtatcagcagcgatcacctggagcccatc
actcccaccaagaacaacaaggtgaaggtgattctgggagaagaccgcgaggcgacgggt
atcctgctgagtatcgacggagacgacggcatcgtccgcatggagctggacgaccagctg
aagatcctcaacctgaggttcctgggacgcctcgagcactga
DBGET
integrated database retrieval system
