Micropterus salmoides (largemouth bass): 119882851
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Entry
119882851 CDS
T07309
Symbol
hif1al
Name
(RefSeq) LOW QUALITY PROTEIN: hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04137
Mitophagy - animal
msam04140
Autophagy - animal
msam04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119882851 (hif1al)
04137 Mitophagy - animal
119882851 (hif1al)
04148 Efferocytosis
119882851 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msam03000
]
119882851 (hif1al)
Transcription factors [BR:
msam03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119882851 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
119882851
NCBI-ProteinID:
XP_038549070
LinkDB
All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MEEKEDTVAVKRTSSEQRKLRSRDAARCRRSQETEVFYELAHTLPLPRRVTTHLDKSAIM
RIALSFLRVRRLLQPGREGEEEEEEEEXEDPMDVFYPQALAGFIMVMTEEGDMIYLTENV
SSHIGITQLELLGQSIYDFVHPCDQEELRDLLTPRPGLSKKLLTEQPSERNFFLRMKSTL
TSRGRTVNIKSASWKVLHCTGHMRPFAGSSTSPPAARVMTLLCEPIPHPSSVEFPLDTCT
FLTRHSMDLCFTHCEGRVTELVGYKPDDLIGRSAFEFHHALDSNQMNKWLHILLSKGQVS
TSHYRFLVNSGGFVWAETQATIIYNSKTSQPEAIVCLNFILSAVEQPDVVFSIEQIRCGK
TEPHSTALASEDCGTSDICDSDPDSECLTSSSQADDECSNSSSAEELFFKLKEQPEELLQ
LAPEAGDAIVPLTGDFVELTFASPSSPDSVPDHPQDLCSPQLRQLLSPIFNPITPPPSSS
PPSSPDLDQSSCEDVVMDTSDVEKFFAIWPNEDQKKGETLEDMDGMDLDMLAPYISMDDD
FQLTVLSNLPEEADKPQSFLSEASTVTPAVTVSRKRTHNPDEEMLSQLRIQDKRQKQDAS
PIEEELLLTHRLLGCLEETDQSDLVLDPRPGGRSRLLTDRDPLLGGMQGLCDTAALMRDI
FIPRPPDMSPPLSPLT
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaagaggacaccgtcgcggtcaaacgtaccagttccgagcagaggaagctg
cgttctcgtgatgctgccagatgtaggcggagtcaagagacggaggtgttttatgagctc
gcccacactctgccgcttcctcgccgagtcacaacccacctggacaaatccgccatcatg
agaatcgccctcagctttctgcgggtgcgccgtctccttcaacccggacgagaaggagag
gaggaggaggaggaggaggagnaggaggatccaatggacgttttctaccctcaggcactg
gctggtttcatcatggtgatgactgaggagggagacatgatctacctgacggaaaacgtc
agcagccacatcggcatcactcagctggagctgctgggtcagagtatttacgactttgtt
catccctgtgatcaggaggagctccgagacctgctgactccacgtccaggtttgagcaag
aaactgttgacagaacagccgagtgagaggaacttcttcctgagaatgaagagcactctg
accagcagggggcgcactgtcaacatcaagtctgcctcctggaaggttctccactgcaca
ggtcacatgcgcccatttgccggcagctccacgtcgccccctgcagccagagtgatgacc
ttgctgtgtgagcccatccctcacccgtccagcgtggagttccctctggacacctgcacc
tttctcacccgccacagcatggacctgtgcttcacacactgcgagggcagggtgacagag
ttggtgggatacaaacccgacgatctgattggccgctcagcctttgagtttcatcatgca
ctcgactctaatcagatgaacaaatggctgcacatattgctgagcaaaggtcaggtcagc
accagccactaccgtttcctggtgaacagcggcggcttcgtctgggcggagacccaggcg
actatcatctacaacagcaagacgtcgcagccagaggccatcgtctgcctcaacttcata
ctcagcgccgtggagcagccggacgttgttttctccattgagcagatccgttgtggcaag
actgaaccccactcaacagcgcttgcatcggaggattgtgggacttctgacatctgtgac
tctgaccctgacagtgagtgtctaaccagctccagtcaggctgatgacgaatgttcgaat
tccagcagcgcagaagagctcttcttcaaactgaaggagcagccggaggagctcctccag
ttggctccggaggccggagacgccattgtgccgctgacaggagattttgttgagctgacg
tttgccagtccgtccagtccagactctgtgccggaccaccctcaggatctgtgctctcca
cagctgcgacagctcctctcacccatcttcaaccccatcactccaccgccatcatcatca
ccaccctcctcacctgatcttgaccagagctcctgtgaggatgttgtgatggacaccagc
gacgtggagaagttctttgccatttggccaaatgaggatcagaaaaaaggagaaacactg
gaggacatggatgggatggatctggacatgttggctccatacatctctatggatgacgat
ttccagctaaccgtcctcagcaatttgccagaggaagccgacaaacctcagtcctttttg
tctgaagcctcaactgtgacaccggcagtcacagtgagcaggaaacggactcataacccg
gacgaggagatgctgtcccagctgaggattcaggacaagagacagaaacaagatgcttcc
ccaatagaagaggaacttcttctcacccacagattactgggctgtcttgaggaaactgac
caatcagatttggtcctggaccctagaccaggtgggcggagccggctgcttacagacaga
gaccctcttttaggaggcatgcagggactctgtgatacagcagctctgatgagagacata
ttcatacctcgcccacctgacatgtcgccgcccctctcgcctttgacttga
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