Micropterus salmoides (largemouth bass): 119883875
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Entry
119883875 CDS
T07309
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119883875 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119883875 (ddx5)
03009 Ribosome biogenesis [BR:
msam03009
]
119883875 (ddx5)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119883875 (ddx5)
Spliceosome [BR:
msam03041
]
Complex A
U1 snRNP components
U1 related factors
119883875 (ddx5)
Complex B
119883875 (ddx5)
Ribosome biogenesis [BR:
msam03009
]
Eukaryotic type
Pre-60S particles
Helicases
119883875 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119883875
NCBI-ProteinID:
XP_038550342
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGNRGGGGGKFGNPGERLRKKQWNLDELPKFEKNFY
QQHPDVARRSLQEVEQYRRAKTITFKGRDCPNPIAKFHEASFPSYVMDVINKQNWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKENKLLRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQMAEDRG
GRSRGGRGGDYRDDRRDRYSSGRRDFGSFRDRDNGRGFDNGPNKTFGTNSQNGSYGGSNN
SGSNGFSGGSYNGNGQSNFSNNQTGAFGGQTNFQAQQFVPSKGGAQTGASHPPFPFPQAQ
APQHPPPLVPYPMPPQFSQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtattccgacagagaccgtggtagagacagagatagaggctatggcggcggc
cctcctcgcttcggtggcaaccgtggtggaggtggagggaagtttggcaatcctggcgaa
cggctgcggaagaaacagtggaacctggacgagctcccaaagtttgagaaaaacttctac
cagcagcatcccgatgttgcccgaaggtctctgcaagaagttgaacaatatagaagggcc
aaaacaattacgtttaaagggagagattgcccaaatcctattgcaaagttccatgaggcc
agtttcccatcatatgtgatggatgtgatcaacaaacaaaactggagtgaaccaactccc
atccaggctcagggctggccactggctcttagtggcaaggatatggttggcattgcacag
accggctctgggaaaactctttcttatttgttgcctgcaattgtgcacatcaaccaccag
cctttcctggaacgtggagatggtcccatttgcttggtgctagcgccgacccgtgagctg
gcacagcaggtgcagcaggtggctgccgaatatggcagagcttctcgcctgaaatcgacc
tgtatctatggaggagcgcccaagggaccccagatccgtgacctggaaagaggtgtggag
atctgcattgctactccgggaaggctcattgactttcttgaggcaggaaagacaaacctc
cgtcgctgcacctaccttgtgctggatgaggccgacagaatgctggacatgggctttgag
ccacagatccggaaaattgttgaccaaatcagacctgaccgtcagactctgatgtggagt
gcgacttggccgaaagaggttcgccagctggcagaggatttcctgaaggaatacgtccag
atcaatgtcggggcgttgcagctcagtgccaaccacaacatcttgcagatagtggatgtc
tgcaatgatggagagaaagagaacaaacttctgcgactcctggaggaaatcatgagtgag
aaggagaataagaccataatctttgtagagaccaagaggcggtgtgatgacctcaccagg
aggatgagaagggatggatggccggctatgggaatccatggagataaaagccagcaggaa
agagactgggttctcaatgagttcaaatacggaaaggctccaattctcattgctacagat
gttgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaactatgactacccc
aacaactctgaggactatatccaccgcattggcagaacggctcgtagccaaaagacaggc
acagcttataccttcttcactccaaacaacatgaggcaagccagcgacctcatctctgtg
ctccgcgaggccaaccaggcaatcaaccccaagctcctccaaatggcggaagacagagga
ggtcgttcaaggggaggccgaggtggtgattatagagatgaccgtcgggataggtattcc
tctggaaggcgtgattttggcagttttagggacagggataacggtagagggtttgacaac
ggaccaaataaaacgtttggcacaaattcacagaacggaagctatgggggcagtaacaac
agtggcagcaatggcttcagcggaggcagctacaatggtaatggacagtccaactttagt
aacaaccaaacgggcgccttcggaggccagaccaacttccaggcccagcagtttgttccc
agtaagggtggtgcacagactggcgcgagtcatccccctttcccattcccccaggcacag
gctccgcagcatcccccacctctggtgccctaccccatgccccctcagttctctcagtaa
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