Micropterus salmoides (largemouth bass): 119884622
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Entry
119884622 CDS
T07309
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119884622
03036 Chromosome and associated proteins [BR:
msam03036
]
119884622
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119884622
Chromosome and associated proteins [BR:
msam03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119884622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
119884622
NCBI-ProteinID:
XP_038550935
LinkDB
All DBs
Position
Unknown
AA seq
2046 aa
AA seq
DB search
MEDKKKKKEDKKKREISQKVPEQKIKVPDSAKPSCSQPLATPGSVSPSPGPVAPSSPSPG
AAGVSAQVPPGGGNNAKQRIAVANGQPSSSPSGSQTSQQQRYMSREVPPRFRCQQDHKVL
LKRGQPPLSSMLLGGGGGEGGAGGSGWVATPSPSSQGADNPNANTAGGTDSNLGSSSASP
PNSNSSSLCVAALSSSTTTSTYANSTWGAGSGSPSSSQGCGKVIVDGTDLGDWPSILGGA
KLSSDGAGGGVQEQDCPGNNNNSSASWSEKNIQQKGGAVGGGGRGGAGNMDNPSSPRSSP
LSSSSSLNECVQSSGGVWGSSTSSQVEAGLGSAAFYNSKVSQLLPGPQESPVSGSSSVPG
ANFNPNVNPSAWPALVQGGTSTSASDGLPLHPSITSASSFSASTTLITTHTLSSVNQTGL
HQQHTETAVGARSGEQQQHLGNQGPELGSSGGACGPNQEGGDERDCGVASVEGEGSGNLS
GSSSSSSAASSSWRSMPPVSSDHSAGASQADGWGAGGTGAQGEEGNVWGFGSQGDKAGWG
TGSDGGSNTPVVSQGAWDGGSSEAEWGVTVGGVSSRNLAIGGGRGGDGSSNSSSSEGSVG
VGVSVLQDSASPKFATMTKAWDNQKGMESGDVAVGEWGGGEGQGGGTGGGGPSSSSGGGS
IAGSGGGGSDSGQKQEPASSVQHSPQQTSNAEVALLSMLNRSDLDPRVLCNTGWGQTQIR
QNVAWDLDTTTRAGNRNEKSSSSSSAFSSATVNTTTTRGPGYPSNTSSVINDPSAGSHTT
SLNSGPATVRDGWDGGATRSPCGHHMPGSTTRKPGTPEENMEGNQGKAAGGWGDPPHENK
GKGWGTEEQQWGDRRGGGGKWRDFGEQGSGWADAPEDKGTGGWKGTERGEAGSWRGQCGG
GGDWGQRDSTPGGGCGDGRSRGGNKSDEGSSWGNLDEGGCPRGGWGDGGGGKSHQDWGSA
KPHTTAQIPNSQVAPMKAPNQQQHQSQGQQHQGGLTQGGWNSRSSIGGGGPPSKNQNQSS
GWTSGPIPQISGGGGDSLESSGWEEPSPQSISRKMEIDDGTSAWGDPNRYSSKNVNLWDK
NSATPGQSHGQQAPPPPPPMQQQPPRRQQGMQHSRDTNPGNAAVGPDMWGGGAQSVDNGT
AAWGQVSEAATGWGDSDEPGKTTGWGNPSPNPGKPVTKSMESWAGKGESSVAASRNPSWD
EEDDGGGGVWNSTGSQGSSSSFNSGGWGQTHGGKRGNIKSGGGDSWMNPVSRQFSNMGLL
GDDPSVDKKMEGDKRGMTDYNGEMRRGGRGGGYRMPSSKDMGSVDMGPYGEKMGGHGAFV
GSGGGMPQPRGMHQPGMHPMNPSQGLRAQVPHQFLSAQVPGPMLKQMPSPGGSVGGVVGG
VGGVGGVSGVGSVGGVGGVGGGVFSPQISPQQLAMLSNIYPHMQQFHLACQLLLQQQQQQ
QQQLLQNQRKFPQPQPLRQQPDPQQLARIMAILQQQRQHQQGGVGGAAAGGGSSKLSPSH
LGGGLSKQPMVDSLPHPGMGGALSDLHAKTQGMYSGLELSPMMGGMKDTGGQQSRFKWMM
EGHSPAPSPPDTTLHKNGPLPSAIKVRGGSPYSQYEMLGGDGLGIPHQGSADNWHRTPGS
KMGHKPATSSWPPEFQPGVPWKGIQSSGDPDSDPYMTPGSVLGSPGPPSLNDSDHQLLRD
NIGPNPSLNTSLPSPGAWPYSASDSPLSNAHSTGKYSEYKPSWPPEPIGQNKLWKTNRNS
SQLPRPPPGLTNQKQASPSPWGSGGPRLARSWGGGGMNQESRFGPGSAWSDGVASRGSCW
LLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSSRQEAAKAQGALHMCVLG
NTTILAEFVSEEEVARYFAHSQAGGAEGVSSGGASAGGTQGSSGTGTTVASSGGSSPGNE
RAAAGTTSGGNGNGGGGGESGAAVLGSARSSGSAWQSLDGTGSSSETSSAQGPGLGIFSQ
WSTNGAGEGGGVGGVESGRAGLWGGMTAGYPSSSLWGAPQMEERHQMDSPAALLPGDLLG
GGSDSI
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaaaaagaaagaagataaaaagaaaagggaaatttctcagaaggtg
ccagaacagaaaatcaaagtgccagattcagccaagccctcctgttcccagccgctcgcc
accccaggctcagtgtcccccagccctggccctgttgccccctcatcccccagtcctggt
gcagccggggtttctgcacaagttcctcctggtggcgggaacaatgcaaagcagcggatt
gctgtggccaacggacagccctcctcctccccctctggcagccagacctcccaacagcag
cgatacatgtccagagaggttccaccaagatttcgctgccagcaggaccataaagtgcta
ctgaagaggggccagccaccgctgtcctccatgctgctggggggtggaggaggggaaggg
ggtgcgggaggtagtggctgggtagccaccccatctccttcctcacagggtgcagataac
cccaatgcaaacacagctggaggcacagattccaacctgggttcatcctctgcttcaccc
cccaactccaactcatcctcattatgtgtcgctgctctgtcgtcttctactactacttca
acttatgcaaattccacatggggggcaggctctggcagtccgtcctcttctcagggctgc
gggaaggtgattgtggatgggactgacctgggtgattggcctagcatcctaggtggggcc
aaattgagttctgacggggctggaggaggggtgcaggagcaagattgccccggtaacaac
aacaacagtagtgcctcatggagtgagaaaaacatccagcagaagggaggagcagtagga
ggaggaggaagaggaggagcagggaacatggacaatccttcctcacctcgttcttctcct
ctttcctcctcttcctcgcttaatgaatgtgttcagtcaagtggtggcgtgtggggctct
tccacctcctctcaggtggaggcagggctaggatcagcagcattttacaattccaaagtc
tcccaacttcttcccgggcctcaggagagccctgtgagtggcagcagtagtgtccctggt
gccaatttcaaccccaacgtgaacccctctgcctggcctgccctggtgcagggtgggaca
tcaacttcggctagcgacggccttccactacacccgtccattacttcagcttcctcgttc
tctgccagcaccaccctcatcaccactcacactctttcatctgtgaatcaaactggtctc
catcagcagcacactgagacagctgtgggagccaggagtggagaacagcagcagcactta
ggaaaccaagggccagagttgggttcaagcgggggagcatgtggaccaaatcaagaaggt
ggcgatgagagggactgtggggttgctagtgttgaaggagaagggagtggcaatctttct
ggctcttcgtcttcctcctctgctgcctcgtcttcttggagatccatgcctccagtgtcc
tctgaccacagtgcaggtgcctcacaggcagatggatggggtgcaggagggactggagct
cagggggaggaaggtaatgtgtggggctttggtagccagggtgacaaggcagggtggggc
acgggaagtgatggtggctcaaataccccagtggtatctcagggagcgtgggatggaggc
agttcagaagcagagtggggtgttacagtgggaggtgtaagttcgagaaacttagcaata
ggaggtggacgaggaggcgatgggagcagcaacagcagcagtagtgaaggcagtgtaggt
gttggtgtcagtgttttgcaggactctgcctcaccaaagtttgcaactatgacaaaagct
tgggacaatcagaaagggatggaaagtggggacgtggcagttggggagtggggtggagga
gaagggcagggtggaggcactggaggtggaggaccctcatcttctagcggaggaggatcc
atagcaggaagtggtggaggagggagtgatagcggacaaaagcaagagccagcctcttct
gtacaacactctccccaacagacctccaatgctgaagtggccttactcagcatgctcaat
cgatctgacctggaccccagggttctgtgtaatactggctggggacagacccagattcga
cagaatgtggcctgggacctggacaccacaacaagagcaggaaacagaaatgaaaaaagt
tcttcatcttcatctgcattctcatcagcaaccgtgaacactaccactactcgcggtcct
gggtacccgtctaacaccagttcagtaattaatgatccctcggctggcagtcatacgact
agcctgaactctggccctgctacagtgagggatggctgggatggtggtgctacacggtca
ccctgtggtcatcacatgcccggtagcactacaaggaagccaggaacgccagaagaaaat
atggagggcaaccaggggaaggcagctggaggctggggtgatcccccacatgaaaacaag
ggcaaaggatgggggactgaagaacaacaatggggggatcgcagaggtggaggagggaag
tggagagactttggagaacagggtagtgggtgggcagatgctccagaggataaagggaca
ggtgggtggaaggggactgaaagaggggaggcagggagttggagaggacagtgtggtggg
ggaggagactggggacagagagactctacacctggaggtgggtgtggagatgggcgaagc
agaggtggaaacaaatctgatgagggatcttcctggggtaatttggacgaagggggatgt
ccgcgaggaggatggggagatgggggtggaggcaaatctcaccaggactgggggagtgct
aagccccacacaacagcacagataccaaacagccaagtggcaccaatgaaagccccaaat
caacagcagcaccaatcacagggccagcagcaccaaggaggtctcacgcaaggagggtgg
aatagccgttccagcattggaggtggaggtccaccttctaagaatcagaaccaaagttcg
ggctggacctccggcccgatcccccaaatatctgggggtgggggtgactccctggagtcc
agtggctgggaagaaccctcccctcagtccatcagtcgcaaaatggaaatcgatgatggc
acttcagcctggggagacccaaatcgctacagcagcaagaatgtgaatttatgggacaaa
aacagtgctacgcccggccaaagccatggtcagcaggccccaccaccaccaccccccatg
cagcaacaaccacctagaaggcagcaggggatgcagcacagcagagacacaaatcctggc
aatgctgcagttggtccagatatgtgggggggaggtgcacaatctgtggataatggtacg
gctgcttggggtcaggtgtctgaggcagcaacaggttggggtgattcagatgaacctggc
aaaactactggctggggaaacccttcacccaaccctggcaaacctgtcaccaagtccatg
gaaagctgggctggtaagggagagagttctgtcgcagcctcccgtaaccccagctgggac
gaggaagatgatggtggcggaggggtctggaacagcactggctcccagggaagcagctcc
tcgttcaactctggaggctggggtcaaactcatggaggaaagagaggcaacatcaagagt
ggaggaggtgacagctggatgaacccagtgtcacgccagttttcaaacatgggtcttctg
ggtgatgacccaagtgttgacaaaaagatggaaggagacaagagaggaatgactgactat
aatggagagatgcggaggggaggaagaggtggaggataccgcatgcctagttccaaagac
atgggttctgttgacatggggccttacggtgaaaagatggggggccatggagcgtttgtt
ggcagtggcggaggaatgcctcagcctcgagggatgcaccagccaggcatgcatccaatg
aacccctcccaagggttacgtgctcaagtgcctcatcagttcctgtctgctcaggtgccg
ggtcctatgctgaagcagatgccctctcctggtggcagtgtgggtggagtggttggagga
gtaggtggcgtaggaggcgtcagtggcgttggaagtgtcggaggggttggtggtgttggt
ggaggagtgttctctcctcagatttccccacagcagctagcaatgctcagcaacatttac
ccacacatgcagcagttccatctggcttgtcaactcctgctacaacagcagcagcaacag
cagcagcagcttctccagaaccagaggaagttccctcagcctcagcctctgagacagcag
ccagacccacagcaactggcaaggattatggctattctgcagcagcagagacagcatcag
cagggtggagttggaggtgcagcagcaggaggagggagttccaaactgtccccctctcac
ctgggaggaggcctatccaaacagcccatggtagactcccttccacatcctggaatgggg
ggggccttatcagaccttcatgccaaaacgcaagggatgtactcgggactggagctcagt
cccatgatgggagggatgaaggacacaggaggacagcagtcccgcttcaaatggatgatg
gagggacactccccagctccatctccccctgacacaacacttcacaagaatggcccttta
cccagtgctataaaagtgagaggaggatccccttactcccagtatgaaatgcttggcggt
gatggtttggggattccccaccaaggctctgcagacaactggcaccggacccctgggagt
aaaatggggcacaaacctgccacatccagctggcctccagagttccagcctggtgtgccc
tggaagggaatccagagtagtggagacccagattctgacccctacatgacccctggtagt
gttcttggctccccaggacccccaagcctcaatgactctgaccaccagttactgcgagac
aacatagggccaaacccctccctcaacacctcgctgccttcacctggtgcctggccctat
agtgcctcagacagccccctcagcaatgcacacagtacaggaaagtactctgagtacaag
cccagttggcccccagagcccatcggacaaaacaagttgtggaagaccaatcgcaacagc
tcacagctgccacgccctcctcctggcttaactaatcagaagcaggcctcgccctcccca
tggggaagcggaggcccacggttggcccggagctggggagggggcgggatgaatcaagag
tcaagatttgggccaggttcagcttggagcgatggtgttgcctccagaggaagctgctgg
ttgctgctgagtaacctgacccctcagattgatggctccactctgaggactatctgcatg
cagcatggtcccctgctgaccttccacctcggcctcacccagggcagtgctctgattcgc
tacagcagccggcaggaagcagccaaggcccagggtgcactgcacatgtgtgttctgggc
aacaccacaattctggcagagtttgtgagtgaggaagaagttgctcgctattttgcacat
tcccaggctggaggggcagagggggtcagctcaggaggggcatcggccggtgggacgcag
ggttcatctggaacaggcacaactgtggccagcagtggaggtagctccccagggaatgag
cgggcagcagcaggcacaacttcaggtggaaacggaaatggtggcggaggaggagaaagt
ggggcagcggttctaggtagtgcaaggtcttctggctctgcctggcagagtctcgatggt
acaggcagttcttcagaaacgtcttcagcccaaggacccgggctggggatattttcccag
tggagcaccaacggggcaggggagggagggggtgttgggggagtagagtctgggagggct
gggctctgggggggcatgactgcgggataccccagcagcagcctgtggggggcaccacaa
atggaggaaaggcaccaaatggacagccctgccgcattgttgcctggtgacctgctgggg
ggaggatctgattccatctga
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integrated database retrieval system
