Micropterus salmoides (largemouth bass): 119885040
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Entry
119885040 CDS
T07309
Name
(RefSeq) ATP-dependent RNA helicase DDX19B-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119885040
03015 mRNA surveillance pathway
119885040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119885040
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119885040
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119885040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
119885040
NCBI-ProteinID:
XP_038551223
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MSEDSWAVAVDVQEATTPSIQIDFSKKVDRLRGPRNIRGDINGNIVPERAENGGWTRDGD
KVDLAEQSLLNKLIRRSLVRNRNQVEVLQRDPTSPLYSVKTFEELRLKPELLKGVYNMGF
NRPSRIQENALPMMLAQPPQNLIAQSQSGTGKTAAFSLAMLSHVNPAKKWTQCLCISPTY
ELALQIGQVIEQMGKFCPDVKLAYGIRGSKMERGTKLQQQIVIGTPGTILDWCTKYKLID
PKKITMFVLDEADVMIATQGHRDQSIRIHRQLTKDCQMLLFSATFEDSVWKFAEHVVPDP
NIIRLKREEETLDTIKQFYVVCKEKEDKFTALCNLYGTLTIAQAMIFCHTRKMAAWLTAN
LTKEGHQVALLSGEMTVEQRAAVIERFRNGKEKVLVTTNVSRGIDVEQVSLVVNFDLPVD
MDGNADNETYLHRIGRTGRFGRRGFAVNMVDSKHSMDIINQIEMHFSIQGITKLDTSNLE
EMESLIS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagactcgtgggcggttgcagtcgacgttcaagaagctacaactccatccata
cagattgacttctcaaagaaggtggatcgactgcgtggtccacgcaacataagaggagac
ataaatggcaacattgtgccggagagagctgaaaatggaggctggacaagagacggggac
aaagtggacctggctgaacagtccctgttgaataaactgatccgccgctctctggtgcgg
aacagaaaccaggtggaggttctgcagcgggaccccacctctcctctgtactctgtgaag
acctttgaggagctgagactgaaacctgagctgctgaagggtgtctacaacatgggtttc
aacagaccatccagaatccaggagaatgctttgcccatgatgttggcacagccacctcag
aatctgattgcccagtctcagtctggcacaggtaaaaccgctgctttttctctggccatg
ctcagccatgtaaacccagctaaaaagtggactcagtgcctttgcatctcgccaacatac
gagcttgcgctgcagattggtcaagtaattgagcaaatggggaaattttgtcctgatgtg
aaactggcatatggaattcgaggcagcaaaatggagcgaggcaccaagttgcagcagcag
attgtcataggaacgccgggtacaatcctcgactggtgcaccaagtacaagctcatcgac
ccaaagaagattactatgtttgtgctggacgaggctgatgtgatgatcgccacacagggt
catcgggaccagagcatacgtatccatagacaactgacaaaggactgtcagatgctcctt
ttttctgcaacctttgaggactctgtgtggaagtttgcagagcatgtggttcccgatccc
aatatcatcaggctgaagcgtgaagaggagactctggacaccatcaagcagttctatgtg
gtctgtaaggagaaggaagacaaattcacagcactgtgtaatctatatggcacccttacc
attgcacaggccatgatcttctgccatactcgcaagatggcagcttggctgactgcaaac
ctgaccaaagagggccaccaggtggcattgctgagtggggaaatgaccgtggagcagaga
gctgcggtcatcgaacgcttcaggaacggcaaggaaaaggtgctcgtgaccaccaatgtg
tccagagggattgatgtggaacaagtgtcacttgtggtcaactttgacctgcctgtggac
atggatgggaacgctgacaatgagacataccttcaccggattggccgcacaggacgcttt
ggcagaagaggatttgctgtcaatatggttgacagcaaacacagcatggatattatcaac
caaattgaaatgcatttcagtatacagggaatcacaaaacttgacaccagcaatcttgag
gagatggagagcctaataagctga
DBGET
integrated database retrieval system
