KEGG   Micropterus salmoides (largemouth bass): 119885516
Entry
119885516         CDS       T07309                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    119885516 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msam03019]
    119885516 (rae1)
   03036 Chromosome and associated proteins [BR:msam03036]
    119885516 (rae1)
Messenger RNA biogenesis [BR:msam03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     119885516 (rae1)
Chromosome and associated proteins [BR:msam03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    119885516 (rae1)
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SPT8 Exonuc_X-T_C
Other DBs
NCBI-GeneID: 119885516
NCBI-ProteinID: XP_038551511
LinkDB
Position
Unknown
AA seq 369 aa
MSLFGTNTGFGTGGTGVFGNTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQTHAGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHEGPIKSIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNQNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttatttgggacaaacaccgggtttgggacaggagggaccggtgtctttggaaac
acaacaacagacagccacaatcccatgaaggatgttgaagtgacttcacctccagatgac
agcatcagctgtctggctttcagtcctcccaccatgccagggaacttcctcattggagga
tcctgggccaatgatgtccggtgctgggaggtgcaggacaatggacagactgtccccaaa
gcccaacagacgcacgcaggtccagtgctggatgcgtgctggagcgatgatgggagtaag
gtcttcactgcttcatgtgataaaacagccaagatgtgggatcttaacagcaatcaagca
atgcagattgcacagcatgagggtccgatcaaatcaatccactggataaaagccccaaac
tacagctgcatcatgactggcagttgggacaaaacactgaagttctgggatacccgctct
cccaatcccatgatgtctctgcagatgccagagagatgctactgtgcagatgttgtatac
cccatggcggtggttgccacagctgagagaggactgatagtgtaccagctggagaaccag
ccctctgagtttcgcagaatagactctcctctcaaacatcagcaccgctgtgtcgccata
ttcaaggacaaacaaaacaagcccacaggctttgcactgggaagtattgagggccgagtg
gccatccactatatcaaccctccaaacccagccaaagacaacttcacctttaagtgccac
aggtccaatggaaccaacacaaccactccacaggacatctatgctgtgaatgccatctcc
ttccatcctgtccatggcacactggctactgtgggctcagacgggcgcttcagcttctgg
gacaaagacgctcgcaccaagttaaagacctcggagcagctcgaccagcccattacggct
tgctgcttcaaccaaaatggcaacatctttgcatacgcttccagttacgactggtcgaag
ggccatgagtactacaacccccagaaaaagaattacatcttcctgaggaatgctgcagag
gagctgaagcctcggaacaagaaatggtga

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